Gene : Cagra.15243s0003 C. grandiflora v1.1
Defline:  (1 of 3) PF00240//PF13423 - Ubiquitin family (ubiquitin) // Ubiquitin carboxyl-terminal hydrolase (UCH_1) Genomic Order:  3
Name:  ? Cagra.15243s0003 Secondary Identifier:  ? PAC:28906065
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15243s0003 0.5kb upstream 0.5kb upstream 5300 true Scaffold15243: 9755-15054 Capsella grandiflora
Cagra.15243s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold15243: 14555-15054 Capsella grandiflora
Cagra.15243s0003 0.5kb downstream 0.5kb downstream 5300 true Scaffold15243: 9255-14554 Capsella grandiflora
Cagra.15243s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold15243: 9255-9754 Capsella grandiflora
Cagra.15243s0003 1.0kb upstream 1.0kb upstream 5800 true Scaffold15243: 9755-15554 Capsella grandiflora
Cagra.15243s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold15243: 14555-15554 Capsella grandiflora
Cagra.15243s0003 1.0kb downstream 1.0kb downstream 5800 true Scaffold15243: 8755-14554 Capsella grandiflora
Cagra.15243s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold15243: 8755-9754 Capsella grandiflora
Cagra.15243s0003 2.0kb upstream 2.0kb upstream 6800 true Scaffold15243: 9755-16554 Capsella grandiflora
Cagra.15243s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold15243: 14555-16554 Capsella grandiflora
Cagra.15243s0003 2.0kb downstream 2.0kb downstream 6800 true Scaffold15243: 7755-14554 Capsella grandiflora
Cagra.15243s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold15243: 7755-9754 Capsella grandiflora
Cagra.15243s0003 5.0kb upstream 5.0kb upstream 9800 true Scaffold15243: 9755-19554 Capsella grandiflora
Cagra.15243s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold15243: 14555-19554 Capsella grandiflora
Cagra.15243s0003 5.0kb downstream 5.0kb downstream 9800 true Scaffold15243: 4755-14554 Capsella grandiflora
Cagra.15243s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold15243: 4755-9754 Capsella grandiflora
Cagra.15243s0003 10.0kb upstream 10.0kb upstream 14800 true Scaffold15243: 9755-24554 Capsella grandiflora
Cagra.15243s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold15243: 14555-24554 Capsella grandiflora
Cagra.15243s0003 10.0kb downstream 10.0kb downstream 14554 true Scaffold15243: 1-14554 Capsella grandiflora
Cagra.15243s0003 10.0kb downstream 10.0kb downstream 9754 false Scaffold15243: 1-9754 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360361 5261 Brassicaceae View MSA
123832659 5264 Brassicales-Malvales View MSA
124340718 5266 SBM View MSA
124244727 5268 Malvidae View MSA
124066467 5270 Rosid View MSA
123739899 5271 Pentapetalae View MSA
122787327 5272 Eudicot View MSA
122042667 5273 Angiosperm View MSA
121345593 5274 Embryophyte View MSA
123424639 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain