Gene : Cagra.15017s0003 C. grandiflora v1.1
Defline:  (1 of 54) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3
Name:  ? Cagra.15017s0003 Secondary Identifier:  ? PAC:28898087
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15017s0003 0.5kb upstream 0.5kb upstream 2403 true Scaffold15017: 8737-11139 Capsella grandiflora
Cagra.15017s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold15017: 8737-9236 Capsella grandiflora
Cagra.15017s0003 0.5kb downstream 0.5kb downstream 2403 true Scaffold15017: 9237-11639 Capsella grandiflora
Cagra.15017s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold15017: 11140-11639 Capsella grandiflora
Cagra.15017s0003 1.0kb upstream 1.0kb upstream 2903 true Scaffold15017: 8237-11139 Capsella grandiflora
Cagra.15017s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold15017: 8237-9236 Capsella grandiflora
Cagra.15017s0003 1.0kb downstream 1.0kb downstream 2903 true Scaffold15017: 9237-12139 Capsella grandiflora
Cagra.15017s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold15017: 11140-12139 Capsella grandiflora
Cagra.15017s0003 2.0kb upstream 2.0kb upstream 3903 true Scaffold15017: 7237-11139 Capsella grandiflora
Cagra.15017s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold15017: 7237-9236 Capsella grandiflora
Cagra.15017s0003 2.0kb downstream 2.0kb downstream 3903 true Scaffold15017: 9237-13139 Capsella grandiflora
Cagra.15017s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold15017: 11140-13139 Capsella grandiflora
Cagra.15017s0003 5.0kb upstream 5.0kb upstream 6903 true Scaffold15017: 4237-11139 Capsella grandiflora
Cagra.15017s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold15017: 4237-9236 Capsella grandiflora
Cagra.15017s0003 5.0kb downstream 5.0kb downstream 6903 true Scaffold15017: 9237-16139 Capsella grandiflora
Cagra.15017s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold15017: 11140-16139 Capsella grandiflora
Cagra.15017s0003 10.0kb upstream 10.0kb upstream 11139 true Scaffold15017: 1-11139 Capsella grandiflora
Cagra.15017s0003 10.0kb upstream 10.0kb upstream 9236 false Scaffold15017: 1-9236 Capsella grandiflora
Cagra.15017s0003 10.0kb downstream 10.0kb downstream 9602 true Scaffold15017: 9237-18838 Capsella grandiflora
Cagra.15017s0003 10.0kb downstream 10.0kb downstream 7699 false Scaffold15017: 11140-18838 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378107 5261 Brassicaceae View MSA
123801745 5264 Brassicales-Malvales View MSA
124351259 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain