Gene : Cagra.13923s0005 C. grandiflora v1.1
Defline:  (1 of 8) PTHR11685:SF135 - E3 UBIQUITIN-PROTEIN LIGASE ARI10-RELATED Genomic Order:  5
Name:  ? Cagra.13923s0005 Secondary Identifier:  ? PAC:28901728
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.13923s0005 0.5kb upstream 0.5kb upstream 5560 true Scaffold13923: 27015-32574 Capsella grandiflora
Cagra.13923s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold13923: 32075-32574 Capsella grandiflora
Cagra.13923s0005 0.5kb downstream 0.5kb downstream 5560 true Scaffold13923: 26515-32074 Capsella grandiflora
Cagra.13923s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold13923: 26515-27014 Capsella grandiflora
Cagra.13923s0005 1.0kb upstream 1.0kb upstream 6060 true Scaffold13923: 27015-33074 Capsella grandiflora
Cagra.13923s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold13923: 32075-33074 Capsella grandiflora
Cagra.13923s0005 1.0kb downstream 1.0kb downstream 6060 true Scaffold13923: 26015-32074 Capsella grandiflora
Cagra.13923s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold13923: 26015-27014 Capsella grandiflora
Cagra.13923s0005 2.0kb upstream 2.0kb upstream 7060 true Scaffold13923: 27015-34074 Capsella grandiflora
Cagra.13923s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold13923: 32075-34074 Capsella grandiflora
Cagra.13923s0005 2.0kb downstream 2.0kb downstream 7060 true Scaffold13923: 25015-32074 Capsella grandiflora
Cagra.13923s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold13923: 25015-27014 Capsella grandiflora
Cagra.13923s0005 5.0kb upstream 5.0kb upstream 10060 true Scaffold13923: 27015-37074 Capsella grandiflora
Cagra.13923s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold13923: 32075-37074 Capsella grandiflora
Cagra.13923s0005 5.0kb downstream 5.0kb downstream 10060 true Scaffold13923: 22015-32074 Capsella grandiflora
Cagra.13923s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold13923: 22015-27014 Capsella grandiflora
Cagra.13923s0005 10.0kb upstream 10.0kb upstream 15060 true Scaffold13923: 27015-42074 Capsella grandiflora
Cagra.13923s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold13923: 32075-42074 Capsella grandiflora
Cagra.13923s0005 10.0kb downstream 10.0kb downstream 15060 true Scaffold13923: 17015-32074 Capsella grandiflora
Cagra.13923s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold13923: 17015-27014 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365268 5261 Brassicaceae View MSA
123831076 5264 Brassicales-Malvales View MSA
124348050 5266 SBM View MSA
124248365 5268 Malvidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain