Gene : Cagra.14373s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  3
Name:  ? Cagra.14373s0003 Secondary Identifier:  ? PAC:28899290
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  
Cgrandiflora PWY-6348 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.14373s0003 0.5kb upstream 0.5kb upstream 2210 true Scaffold14373: 4980-7189 Capsella grandiflora
Cagra.14373s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold14373: 4980-5479 Capsella grandiflora
Cagra.14373s0003 0.5kb downstream 0.5kb downstream 2210 true Scaffold14373: 5480-7689 Capsella grandiflora
Cagra.14373s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold14373: 7190-7689 Capsella grandiflora
Cagra.14373s0003 1.0kb upstream 1.0kb upstream 2710 true Scaffold14373: 4480-7189 Capsella grandiflora
Cagra.14373s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold14373: 4480-5479 Capsella grandiflora
Cagra.14373s0003 1.0kb downstream 1.0kb downstream 2710 true Scaffold14373: 5480-8189 Capsella grandiflora
Cagra.14373s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold14373: 7190-8189 Capsella grandiflora
Cagra.14373s0003 2.0kb upstream 2.0kb upstream 3710 true Scaffold14373: 3480-7189 Capsella grandiflora
Cagra.14373s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold14373: 3480-5479 Capsella grandiflora
Cagra.14373s0003 2.0kb downstream 2.0kb downstream 3710 true Scaffold14373: 5480-9189 Capsella grandiflora
Cagra.14373s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold14373: 7190-9189 Capsella grandiflora
Cagra.14373s0003 5.0kb upstream 5.0kb upstream 6710 true Scaffold14373: 480-7189 Capsella grandiflora
Cagra.14373s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold14373: 480-5479 Capsella grandiflora
Cagra.14373s0003 5.0kb downstream 5.0kb downstream 3772 true Scaffold14373: 5480-9251 Capsella grandiflora
Cagra.14373s0003 5.0kb downstream 5.0kb downstream 2062 false Scaffold14373: 7190-9251 Capsella grandiflora
Cagra.14373s0003 10.0kb upstream 10.0kb upstream 7189 true Scaffold14373: 1-7189 Capsella grandiflora
Cagra.14373s0003 10.0kb upstream 10.0kb upstream 5479 false Scaffold14373: 1-5479 Capsella grandiflora
Cagra.14373s0003 10.0kb downstream 10.0kb downstream 3772 true Scaffold14373: 5480-9251 Capsella grandiflora
Cagra.14373s0003 10.0kb downstream 10.0kb downstream 2062 false Scaffold14373: 7190-9251 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362877 5261 Brassicaceae View MSA
123830968 5264 Brassicales-Malvales View MSA
124342350 5266 SBM View MSA
124243217 5268 Malvidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain