Gene : Cagra.13768s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11124 - VACUOLAR SORTING PROTEIN VPS29 Genomic Order:  2
Name:  ? Cagra.13768s0002 Secondary Identifier:  ? PAC:28907530
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.13768s0002 0.5kb upstream 0.5kb upstream 2970 true Scaffold13768: 3283-6252 Capsella grandiflora
Cagra.13768s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold13768: 5753-6252 Capsella grandiflora
Cagra.13768s0002 0.5kb downstream 0.5kb downstream 2970 true Scaffold13768: 2783-5752 Capsella grandiflora
Cagra.13768s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold13768: 2783-3282 Capsella grandiflora
Cagra.13768s0002 1.0kb upstream 1.0kb upstream 3470 true Scaffold13768: 3283-6752 Capsella grandiflora
Cagra.13768s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold13768: 5753-6752 Capsella grandiflora
Cagra.13768s0002 1.0kb downstream 1.0kb downstream 3470 true Scaffold13768: 2283-5752 Capsella grandiflora
Cagra.13768s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold13768: 2283-3282 Capsella grandiflora
Cagra.13768s0002 2.0kb upstream 2.0kb upstream 4470 true Scaffold13768: 3283-7752 Capsella grandiflora
Cagra.13768s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold13768: 5753-7752 Capsella grandiflora
Cagra.13768s0002 2.0kb downstream 2.0kb downstream 4470 true Scaffold13768: 1283-5752 Capsella grandiflora
Cagra.13768s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold13768: 1283-3282 Capsella grandiflora
Cagra.13768s0002 5.0kb upstream 5.0kb upstream 7470 true Scaffold13768: 3283-10752 Capsella grandiflora
Cagra.13768s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold13768: 5753-10752 Capsella grandiflora
Cagra.13768s0002 5.0kb downstream 5.0kb downstream 5752 true Scaffold13768: 1-5752 Capsella grandiflora
Cagra.13768s0002 5.0kb downstream 5.0kb downstream 3282 false Scaffold13768: 1-3282 Capsella grandiflora
Cagra.13768s0002 10.0kb upstream 10.0kb upstream 12470 true Scaffold13768: 3283-15752 Capsella grandiflora
Cagra.13768s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold13768: 5753-15752 Capsella grandiflora
Cagra.13768s0002 10.0kb downstream 10.0kb downstream 5752 true Scaffold13768: 1-5752 Capsella grandiflora
Cagra.13768s0002 10.0kb downstream 10.0kb downstream 3282 false Scaffold13768: 1-3282 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361488 5261 Brassicaceae View MSA
123835756 5264 Brassicales-Malvales View MSA
124348903 5266 SBM View MSA
124250664 5268 Malvidae View MSA
124071774 5270 Rosid View MSA
123736460 5271 Pentapetalae View MSA
122787236 5272 Eudicot View MSA
122043646 5273 Angiosperm View MSA
121346806 5274 Embryophyte View MSA
123424212 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain