Gene : Cagra.13389s0018 C. grandiflora v1.1
Defline:  (1 of 2) PTHR18896:SF65 - PHOSPHOLIPASE D BETA 1-RELATED Genomic Order:  18
Name:  ? Cagra.13389s0018 Secondary Identifier:  ? PAC:28907483
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPASYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3561 Capsella grandiflora pathologic  
Cgrandiflora PWY-7039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.13389s0018 0.5kb upstream 0.5kb upstream 7024 true Scaffold13389: 63050-70073 Capsella grandiflora
Cagra.13389s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold13389: 69574-70073 Capsella grandiflora
Cagra.13389s0018 0.5kb downstream 0.5kb downstream 7024 true Scaffold13389: 62550-69573 Capsella grandiflora
Cagra.13389s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold13389: 62550-63049 Capsella grandiflora
Cagra.13389s0018 1.0kb upstream 1.0kb upstream 7524 true Scaffold13389: 63050-70573 Capsella grandiflora
Cagra.13389s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold13389: 69574-70573 Capsella grandiflora
Cagra.13389s0018 1.0kb downstream 1.0kb downstream 7524 true Scaffold13389: 62050-69573 Capsella grandiflora
Cagra.13389s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold13389: 62050-63049 Capsella grandiflora
Cagra.13389s0018 2.0kb upstream 2.0kb upstream 8524 true Scaffold13389: 63050-71573 Capsella grandiflora
Cagra.13389s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold13389: 69574-71573 Capsella grandiflora
Cagra.13389s0018 2.0kb downstream 2.0kb downstream 8524 true Scaffold13389: 61050-69573 Capsella grandiflora
Cagra.13389s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold13389: 61050-63049 Capsella grandiflora
Cagra.13389s0018 5.0kb upstream 5.0kb upstream 11524 true Scaffold13389: 63050-74573 Capsella grandiflora
Cagra.13389s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold13389: 69574-74573 Capsella grandiflora
Cagra.13389s0018 5.0kb downstream 5.0kb downstream 11524 true Scaffold13389: 58050-69573 Capsella grandiflora
Cagra.13389s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold13389: 58050-63049 Capsella grandiflora
Cagra.13389s0018 10.0kb upstream 10.0kb upstream 14729 true Scaffold13389: 63050-77778 Capsella grandiflora
Cagra.13389s0018 10.0kb upstream 10.0kb upstream 8205 false Scaffold13389: 69574-77778 Capsella grandiflora
Cagra.13389s0018 10.0kb downstream 10.0kb downstream 16524 true Scaffold13389: 53050-69573 Capsella grandiflora
Cagra.13389s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold13389: 53050-63049 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365483 5261 Brassicaceae View MSA
123832131 5264 Brassicales-Malvales View MSA
124336574 5266 SBM View MSA
124239673 5268 Malvidae View MSA
124072300 5270 Rosid View MSA
123749008 5271 Pentapetalae View MSA
122790888 5272 Eudicot View MSA
122043294 5273 Angiosperm View MSA
121349961 5274 Embryophyte View MSA
123381517 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain