Gene : Cagra.21227s0001 C. grandiflora v1.1
Defline:  (1 of 4) PF05553//PF14364 - Cotton fibre expressed protein (DUF761) // Domain of unknown function (DUF4408) (DUF4408) Genomic Order:  1
Name:  ? Cagra.21227s0001 Secondary Identifier:  ? PAC:28917932
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.21227s0001 0.5kb upstream 0.5kb upstream 1487 true Scaffold21227: 1-1487 Capsella grandiflora
Cagra.21227s0001 0.5kb upstream 0.5kb upstream 307 false Scaffold21227: 1-307 Capsella grandiflora
Cagra.21227s0001 0.5kb downstream 0.5kb downstream 1680 true Scaffold21227: 308-1987 Capsella grandiflora
Cagra.21227s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold21227: 1488-1987 Capsella grandiflora
Cagra.21227s0001 1.0kb upstream 1.0kb upstream 1487 true Scaffold21227: 1-1487 Capsella grandiflora
Cagra.21227s0001 1.0kb upstream 1.0kb upstream 307 false Scaffold21227: 1-307 Capsella grandiflora
Cagra.21227s0001 1.0kb downstream 1.0kb downstream 2180 true Scaffold21227: 308-2487 Capsella grandiflora
Cagra.21227s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold21227: 1488-2487 Capsella grandiflora
Cagra.21227s0001 2.0kb upstream 2.0kb upstream 1487 true Scaffold21227: 1-1487 Capsella grandiflora
Cagra.21227s0001 2.0kb upstream 2.0kb upstream 307 false Scaffold21227: 1-307 Capsella grandiflora
Cagra.21227s0001 2.0kb downstream 2.0kb downstream 3180 true Scaffold21227: 308-3487 Capsella grandiflora
Cagra.21227s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold21227: 1488-3487 Capsella grandiflora
Cagra.21227s0001 5.0kb upstream 5.0kb upstream 1487 true Scaffold21227: 1-1487 Capsella grandiflora
Cagra.21227s0001 5.0kb upstream 5.0kb upstream 307 false Scaffold21227: 1-307 Capsella grandiflora
Cagra.21227s0001 5.0kb downstream 5.0kb downstream 6180 true Scaffold21227: 308-6487 Capsella grandiflora
Cagra.21227s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold21227: 1488-6487 Capsella grandiflora
Cagra.21227s0001 10.0kb upstream 10.0kb upstream 1487 true Scaffold21227: 1-1487 Capsella grandiflora
Cagra.21227s0001 10.0kb upstream 10.0kb upstream 307 false Scaffold21227: 1-307 Capsella grandiflora
Cagra.21227s0001 10.0kb downstream 10.0kb downstream 10524 true Scaffold21227: 308-10831 Capsella grandiflora
Cagra.21227s0001 10.0kb downstream 10.0kb downstream 9344 false Scaffold21227: 1488-10831 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361974 5261 Brassicaceae View MSA
123832346 5264 Brassicales-Malvales View MSA
124343649 5266 SBM View MSA
124248292 5268 Malvidae View MSA
124071784 5270 Rosid View MSA
123749105 5271 Pentapetalae View MSA
122787298 5272 Eudicot View MSA
122041618 5273 Angiosperm View MSA
121309871 5274 Embryophyte View MSA
123347511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain