Gene : Cagra.21650s0001 C. grandiflora v1.1
Defline:  (1 of 2) 6.1.1.2 - Tryptophan--tRNA ligase / Tryptophanyl-tRNA synthetase Genomic Order:  1
Name:  ? Cagra.21650s0001 Secondary Identifier:  ? PAC:28904800
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.21650s0001 0.5kb upstream 0.5kb upstream 3923 true Scaffold21650: 1-3923 Capsella grandiflora
Cagra.21650s0001 0.5kb upstream 0.5kb upstream 105 false Scaffold21650: 1-105 Capsella grandiflora
Cagra.21650s0001 0.5kb downstream 0.5kb downstream 4318 true Scaffold21650: 106-4423 Capsella grandiflora
Cagra.21650s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold21650: 3924-4423 Capsella grandiflora
Cagra.21650s0001 1.0kb upstream 1.0kb upstream 3923 true Scaffold21650: 1-3923 Capsella grandiflora
Cagra.21650s0001 1.0kb upstream 1.0kb upstream 105 false Scaffold21650: 1-105 Capsella grandiflora
Cagra.21650s0001 1.0kb downstream 1.0kb downstream 4818 true Scaffold21650: 106-4923 Capsella grandiflora
Cagra.21650s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold21650: 3924-4923 Capsella grandiflora
Cagra.21650s0001 2.0kb upstream 2.0kb upstream 3923 true Scaffold21650: 1-3923 Capsella grandiflora
Cagra.21650s0001 2.0kb upstream 2.0kb upstream 105 false Scaffold21650: 1-105 Capsella grandiflora
Cagra.21650s0001 2.0kb downstream 2.0kb downstream 5818 true Scaffold21650: 106-5923 Capsella grandiflora
Cagra.21650s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold21650: 3924-5923 Capsella grandiflora
Cagra.21650s0001 5.0kb upstream 5.0kb upstream 3923 true Scaffold21650: 1-3923 Capsella grandiflora
Cagra.21650s0001 5.0kb upstream 5.0kb upstream 105 false Scaffold21650: 1-105 Capsella grandiflora
Cagra.21650s0001 5.0kb downstream 5.0kb downstream 8818 true Scaffold21650: 106-8923 Capsella grandiflora
Cagra.21650s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold21650: 3924-8923 Capsella grandiflora
Cagra.21650s0001 10.0kb upstream 10.0kb upstream 3923 true Scaffold21650: 1-3923 Capsella grandiflora
Cagra.21650s0001 10.0kb upstream 10.0kb upstream 105 false Scaffold21650: 1-105 Capsella grandiflora
Cagra.21650s0001 10.0kb downstream 10.0kb downstream 13818 true Scaffold21650: 106-13923 Capsella grandiflora
Cagra.21650s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold21650: 3924-13923 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369359 5261 Brassicaceae View MSA
123830028 5264 Brassicales-Malvales View MSA
124345333 5266 SBM View MSA
124250239 5268 Malvidae View MSA
124063283 5270 Rosid View MSA
123736955 5271 Pentapetalae View MSA
122787950 5272 Eudicot View MSA
122047133 5273 Angiosperm View MSA
121345289 5274 Embryophyte View MSA
123423978 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain