Gene : Cagra.18223s0002 C. grandiflora v1.1
Defline:  (1 of 5) PTHR16223:SF29 - TRANSCRIPTION FACTOR BHLH117-RELATED Genomic Order:  2
Name:  ? Cagra.18223s0002 Secondary Identifier:  ? PAC:28909848
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.18223s0002 0.5kb upstream 0.5kb upstream 2909 true Scaffold18223: 5741-8649 Capsella grandiflora
Cagra.18223s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold18223: 8150-8649 Capsella grandiflora
Cagra.18223s0002 0.5kb downstream 0.5kb downstream 2909 true Scaffold18223: 5241-8149 Capsella grandiflora
Cagra.18223s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold18223: 5241-5740 Capsella grandiflora
Cagra.18223s0002 1.0kb upstream 1.0kb upstream 3409 true Scaffold18223: 5741-9149 Capsella grandiflora
Cagra.18223s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold18223: 8150-9149 Capsella grandiflora
Cagra.18223s0002 1.0kb downstream 1.0kb downstream 3409 true Scaffold18223: 4741-8149 Capsella grandiflora
Cagra.18223s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold18223: 4741-5740 Capsella grandiflora
Cagra.18223s0002 2.0kb upstream 2.0kb upstream 4409 true Scaffold18223: 5741-10149 Capsella grandiflora
Cagra.18223s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold18223: 8150-10149 Capsella grandiflora
Cagra.18223s0002 2.0kb downstream 2.0kb downstream 4409 true Scaffold18223: 3741-8149 Capsella grandiflora
Cagra.18223s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold18223: 3741-5740 Capsella grandiflora
Cagra.18223s0002 5.0kb upstream 5.0kb upstream 4575 true Scaffold18223: 5741-10315 Capsella grandiflora
Cagra.18223s0002 5.0kb upstream 5.0kb upstream 2166 false Scaffold18223: 8150-10315 Capsella grandiflora
Cagra.18223s0002 5.0kb downstream 5.0kb downstream 7409 true Scaffold18223: 741-8149 Capsella grandiflora
Cagra.18223s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold18223: 741-5740 Capsella grandiflora
Cagra.18223s0002 10.0kb upstream 10.0kb upstream 4575 true Scaffold18223: 5741-10315 Capsella grandiflora
Cagra.18223s0002 10.0kb upstream 10.0kb upstream 2166 false Scaffold18223: 8150-10315 Capsella grandiflora
Cagra.18223s0002 10.0kb downstream 10.0kb downstream 8149 true Scaffold18223: 1-8149 Capsella grandiflora
Cagra.18223s0002 10.0kb downstream 10.0kb downstream 5740 false Scaffold18223: 1-5740 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377378 5261 Brassicaceae View MSA
123834418 5264 Brassicales-Malvales View MSA
124343262 5266 SBM View MSA
124238615 5268 Malvidae View MSA
124073706 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain