Gene : Cagra.18464s0001 C. grandiflora v1.1
Defline:  (1 of 5) PF03108//PF10551 - MuDR family transposase (DBD_Tnp_Mut) // MULE transposase domain (MULE) Genomic Order:  1
Name:  ? Cagra.18464s0001 Secondary Identifier:  ? PAC:28906471
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.18464s0001 0.5kb upstream 0.5kb upstream 3101 true Scaffold18464: 166-3266 Capsella grandiflora
Cagra.18464s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold18464: 166-665 Capsella grandiflora
Cagra.18464s0001 0.5kb downstream 0.5kb downstream 3101 true Scaffold18464: 666-3766 Capsella grandiflora
Cagra.18464s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold18464: 3267-3766 Capsella grandiflora
Cagra.18464s0001 1.0kb upstream 1.0kb upstream 3266 true Scaffold18464: 1-3266 Capsella grandiflora
Cagra.18464s0001 1.0kb upstream 1.0kb upstream 665 false Scaffold18464: 1-665 Capsella grandiflora
Cagra.18464s0001 1.0kb downstream 1.0kb downstream 3601 true Scaffold18464: 666-4266 Capsella grandiflora
Cagra.18464s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold18464: 3267-4266 Capsella grandiflora
Cagra.18464s0001 2.0kb upstream 2.0kb upstream 3266 true Scaffold18464: 1-3266 Capsella grandiflora
Cagra.18464s0001 2.0kb upstream 2.0kb upstream 665 false Scaffold18464: 1-665 Capsella grandiflora
Cagra.18464s0001 2.0kb downstream 2.0kb downstream 4601 true Scaffold18464: 666-5266 Capsella grandiflora
Cagra.18464s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold18464: 3267-5266 Capsella grandiflora
Cagra.18464s0001 5.0kb upstream 5.0kb upstream 3266 true Scaffold18464: 1-3266 Capsella grandiflora
Cagra.18464s0001 5.0kb upstream 5.0kb upstream 665 false Scaffold18464: 1-665 Capsella grandiflora
Cagra.18464s0001 5.0kb downstream 5.0kb downstream 7601 true Scaffold18464: 666-8266 Capsella grandiflora
Cagra.18464s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold18464: 3267-8266 Capsella grandiflora
Cagra.18464s0001 10.0kb upstream 10.0kb upstream 3266 true Scaffold18464: 1-3266 Capsella grandiflora
Cagra.18464s0001 10.0kb upstream 10.0kb upstream 665 false Scaffold18464: 1-665 Capsella grandiflora
Cagra.18464s0001 10.0kb downstream 10.0kb downstream 11826 true Scaffold18464: 666-12491 Capsella grandiflora
Cagra.18464s0001 10.0kb downstream 10.0kb downstream 9225 false Scaffold18464: 3267-12491 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380038 5261 Brassicaceae View MSA
123842361 5264 Brassicales-Malvales View MSA
124323430 5266 SBM View MSA
124169464 5268 Malvidae View MSA
124041733 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain