Gene : Cagra.18800s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  5
Name:  ? Cagra.18800s0005 Secondary Identifier:  ? PAC:28893824
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.18800s0005 0.5kb upstream 0.5kb upstream 2543 true Scaffold18800: 18021-20563 Capsella grandiflora
Cagra.18800s0005 0.5kb upstream 0.5kb upstream 132 false Scaffold18800: 20432-20563 Capsella grandiflora
Cagra.18800s0005 0.5kb downstream 0.5kb downstream 2911 true Scaffold18800: 17521-20431 Capsella grandiflora
Cagra.18800s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold18800: 17521-18020 Capsella grandiflora
Cagra.18800s0005 1.0kb upstream 1.0kb upstream 2543 true Scaffold18800: 18021-20563 Capsella grandiflora
Cagra.18800s0005 1.0kb upstream 1.0kb upstream 132 false Scaffold18800: 20432-20563 Capsella grandiflora
Cagra.18800s0005 1.0kb downstream 1.0kb downstream 3411 true Scaffold18800: 17021-20431 Capsella grandiflora
Cagra.18800s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold18800: 17021-18020 Capsella grandiflora
Cagra.18800s0005 2.0kb upstream 2.0kb upstream 2543 true Scaffold18800: 18021-20563 Capsella grandiflora
Cagra.18800s0005 2.0kb upstream 2.0kb upstream 132 false Scaffold18800: 20432-20563 Capsella grandiflora
Cagra.18800s0005 2.0kb downstream 2.0kb downstream 4411 true Scaffold18800: 16021-20431 Capsella grandiflora
Cagra.18800s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold18800: 16021-18020 Capsella grandiflora
Cagra.18800s0005 5.0kb upstream 5.0kb upstream 2543 true Scaffold18800: 18021-20563 Capsella grandiflora
Cagra.18800s0005 5.0kb upstream 5.0kb upstream 132 false Scaffold18800: 20432-20563 Capsella grandiflora
Cagra.18800s0005 5.0kb downstream 5.0kb downstream 7411 true Scaffold18800: 13021-20431 Capsella grandiflora
Cagra.18800s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold18800: 13021-18020 Capsella grandiflora
Cagra.18800s0005 10.0kb upstream 10.0kb upstream 2543 true Scaffold18800: 18021-20563 Capsella grandiflora
Cagra.18800s0005 10.0kb upstream 10.0kb upstream 132 false Scaffold18800: 20432-20563 Capsella grandiflora
Cagra.18800s0005 10.0kb downstream 10.0kb downstream 12411 true Scaffold18800: 8021-20431 Capsella grandiflora
Cagra.18800s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold18800: 8021-18020 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367335 5261 Brassicaceae View MSA
123836180 5264 Brassicales-Malvales View MSA
124337596 5266 SBM View MSA
124237844 5268 Malvidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain