Gene : Cagra.1225s0002 C. grandiflora v1.1
Defline:  (1 of 3) PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Genomic Order:  2
Name:  ? Cagra.1225s0002 Secondary Identifier:  ? PAC:28904158
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0002 0.5kb upstream 0.5kb upstream 1814 true Scaffold1225: 2643-4456 Capsella grandiflora
Cagra.1225s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 2643-3142 Capsella grandiflora
Cagra.1225s0002 0.5kb downstream 0.5kb downstream 1814 true Scaffold1225: 3143-4956 Capsella grandiflora
Cagra.1225s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 4457-4956 Capsella grandiflora
Cagra.1225s0002 1.0kb upstream 1.0kb upstream 2314 true Scaffold1225: 2143-4456 Capsella grandiflora
Cagra.1225s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 2143-3142 Capsella grandiflora
Cagra.1225s0002 1.0kb downstream 1.0kb downstream 2314 true Scaffold1225: 3143-5456 Capsella grandiflora
Cagra.1225s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 4457-5456 Capsella grandiflora
Cagra.1225s0002 2.0kb upstream 2.0kb upstream 3314 true Scaffold1225: 1143-4456 Capsella grandiflora
Cagra.1225s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 1143-3142 Capsella grandiflora
Cagra.1225s0002 2.0kb downstream 2.0kb downstream 3314 true Scaffold1225: 3143-6456 Capsella grandiflora
Cagra.1225s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 4457-6456 Capsella grandiflora
Cagra.1225s0002 5.0kb upstream 5.0kb upstream 4456 true Scaffold1225: 1-4456 Capsella grandiflora
Cagra.1225s0002 5.0kb upstream 5.0kb upstream 3142 false Scaffold1225: 1-3142 Capsella grandiflora
Cagra.1225s0002 5.0kb downstream 5.0kb downstream 6314 true Scaffold1225: 3143-9456 Capsella grandiflora
Cagra.1225s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 4457-9456 Capsella grandiflora
Cagra.1225s0002 10.0kb upstream 10.0kb upstream 4456 true Scaffold1225: 1-4456 Capsella grandiflora
Cagra.1225s0002 10.0kb upstream 10.0kb upstream 3142 false Scaffold1225: 1-3142 Capsella grandiflora
Cagra.1225s0002 10.0kb downstream 10.0kb downstream 11314 true Scaffold1225: 3143-14456 Capsella grandiflora
Cagra.1225s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 4457-14456 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369091 5261 Brassicaceae View MSA
123839327 5264 Brassicales-Malvales View MSA
124337844 5266 SBM View MSA
124251275 5268 Malvidae View MSA
124068292 5270 Rosid View MSA
123750856 5271 Pentapetalae View MSA
122796096 5272 Eudicot View MSA
122047388 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121346576 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain