Gene : Cagra.1225s0017 C. grandiflora v1.1
Defline:  (1 of 3) PTHR23023:SF83 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA5-RELATED Genomic Order:  17
Name:  ? Cagra.1225s0017 Secondary Identifier:  ? PAC:28904180
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWYDQC-4 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0017 0.5kb upstream 0.5kb upstream 1781 true Scaffold1225: 63762-65542 Capsella grandiflora
Cagra.1225s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 65043-65542 Capsella grandiflora
Cagra.1225s0017 0.5kb downstream 0.5kb downstream 1781 true Scaffold1225: 63262-65042 Capsella grandiflora
Cagra.1225s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 63262-63761 Capsella grandiflora
Cagra.1225s0017 1.0kb upstream 1.0kb upstream 2281 true Scaffold1225: 63762-66042 Capsella grandiflora
Cagra.1225s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 65043-66042 Capsella grandiflora
Cagra.1225s0017 1.0kb downstream 1.0kb downstream 2281 true Scaffold1225: 62762-65042 Capsella grandiflora
Cagra.1225s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 62762-63761 Capsella grandiflora
Cagra.1225s0017 2.0kb upstream 2.0kb upstream 3281 true Scaffold1225: 63762-67042 Capsella grandiflora
Cagra.1225s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 65043-67042 Capsella grandiflora
Cagra.1225s0017 2.0kb downstream 2.0kb downstream 3281 true Scaffold1225: 61762-65042 Capsella grandiflora
Cagra.1225s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 61762-63761 Capsella grandiflora
Cagra.1225s0017 5.0kb upstream 5.0kb upstream 6281 true Scaffold1225: 63762-70042 Capsella grandiflora
Cagra.1225s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold1225: 65043-70042 Capsella grandiflora
Cagra.1225s0017 5.0kb downstream 5.0kb downstream 6281 true Scaffold1225: 58762-65042 Capsella grandiflora
Cagra.1225s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 58762-63761 Capsella grandiflora
Cagra.1225s0017 10.0kb upstream 10.0kb upstream 11281 true Scaffold1225: 63762-75042 Capsella grandiflora
Cagra.1225s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold1225: 65043-75042 Capsella grandiflora
Cagra.1225s0017 10.0kb downstream 10.0kb downstream 11281 true Scaffold1225: 53762-65042 Capsella grandiflora
Cagra.1225s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 53762-63761 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363996 5261 Brassicaceae View MSA
123831660 5264 Brassicales-Malvales View MSA
124346483 5266 SBM View MSA
124244542 5268 Malvidae View MSA
124062448 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain