Gene : Cagra.1508s0050 C. grandiflora v1.1
Defline:  (1 of 5) PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  50
Name:  ? Cagra.1508s0050 Secondary Identifier:  ? PAC:28905702
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0050 0.5kb upstream 0.5kb upstream 2213 true Scaffold1508: 210091-212303 Capsella grandiflora
Cagra.1508s0050 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 210091-210590 Capsella grandiflora
Cagra.1508s0050 0.5kb downstream 0.5kb downstream 2213 true Scaffold1508: 210591-212803 Capsella grandiflora
Cagra.1508s0050 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 212304-212803 Capsella grandiflora
Cagra.1508s0050 1.0kb upstream 1.0kb upstream 2713 true Scaffold1508: 209591-212303 Capsella grandiflora
Cagra.1508s0050 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 209591-210590 Capsella grandiflora
Cagra.1508s0050 1.0kb downstream 1.0kb downstream 2713 true Scaffold1508: 210591-213303 Capsella grandiflora
Cagra.1508s0050 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 212304-213303 Capsella grandiflora
Cagra.1508s0050 2.0kb upstream 2.0kb upstream 3713 true Scaffold1508: 208591-212303 Capsella grandiflora
Cagra.1508s0050 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 208591-210590 Capsella grandiflora
Cagra.1508s0050 2.0kb downstream 2.0kb downstream 3713 true Scaffold1508: 210591-214303 Capsella grandiflora
Cagra.1508s0050 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 212304-214303 Capsella grandiflora
Cagra.1508s0050 5.0kb upstream 5.0kb upstream 6713 true Scaffold1508: 205591-212303 Capsella grandiflora
Cagra.1508s0050 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 205591-210590 Capsella grandiflora
Cagra.1508s0050 5.0kb downstream 5.0kb downstream 6713 true Scaffold1508: 210591-217303 Capsella grandiflora
Cagra.1508s0050 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 212304-217303 Capsella grandiflora
Cagra.1508s0050 10.0kb upstream 10.0kb upstream 11713 true Scaffold1508: 200591-212303 Capsella grandiflora
Cagra.1508s0050 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 200591-210590 Capsella grandiflora
Cagra.1508s0050 10.0kb downstream 10.0kb downstream 11713 true Scaffold1508: 210591-222303 Capsella grandiflora
Cagra.1508s0050 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 212304-222303 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361084 5261 Brassicaceae View MSA
123832959 5264 Brassicales-Malvales View MSA
124336880 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain