Gene : Cagra.1504s0003 C. grandiflora v1.1
Defline:  (1 of 5) PTHR32266:SF12 - NICOTIANAMINE SYNTHASE-RELATED Genomic Order:  3
Name:  ? Cagra.1504s0003 Secondary Identifier:  ? PAC:28910304
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5957 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1504s0003 0.5kb upstream 0.5kb upstream 1466 true Scaffold1504: 10117-11582 Capsella grandiflora
Cagra.1504s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1504: 11083-11582 Capsella grandiflora
Cagra.1504s0003 0.5kb downstream 0.5kb downstream 1466 true Scaffold1504: 9617-11082 Capsella grandiflora
Cagra.1504s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold1504: 9617-10116 Capsella grandiflora
Cagra.1504s0003 1.0kb upstream 1.0kb upstream 1966 true Scaffold1504: 10117-12082 Capsella grandiflora
Cagra.1504s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1504: 11083-12082 Capsella grandiflora
Cagra.1504s0003 1.0kb downstream 1.0kb downstream 1966 true Scaffold1504: 9117-11082 Capsella grandiflora
Cagra.1504s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold1504: 9117-10116 Capsella grandiflora
Cagra.1504s0003 2.0kb upstream 2.0kb upstream 2966 true Scaffold1504: 10117-13082 Capsella grandiflora
Cagra.1504s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1504: 11083-13082 Capsella grandiflora
Cagra.1504s0003 2.0kb downstream 2.0kb downstream 2966 true Scaffold1504: 8117-11082 Capsella grandiflora
Cagra.1504s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold1504: 8117-10116 Capsella grandiflora
Cagra.1504s0003 5.0kb upstream 5.0kb upstream 5966 true Scaffold1504: 10117-16082 Capsella grandiflora
Cagra.1504s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold1504: 11083-16082 Capsella grandiflora
Cagra.1504s0003 5.0kb downstream 5.0kb downstream 5966 true Scaffold1504: 5117-11082 Capsella grandiflora
Cagra.1504s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold1504: 5117-10116 Capsella grandiflora
Cagra.1504s0003 10.0kb upstream 10.0kb upstream 10966 true Scaffold1504: 10117-21082 Capsella grandiflora
Cagra.1504s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold1504: 11083-21082 Capsella grandiflora
Cagra.1504s0003 10.0kb downstream 10.0kb downstream 10966 true Scaffold1504: 117-11082 Capsella grandiflora
Cagra.1504s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold1504: 117-10116 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366034 5261 Brassicaceae View MSA
123799093 5264 Brassicales-Malvales View MSA
124296648 5266 SBM View MSA
124148739 5268 Malvidae View MSA
124066045 5270 Rosid View MSA
123750791 5271 Pentapetalae View MSA
122792107 5272 Eudicot View MSA
122044478 5273 Angiosperm View MSA
121350055 5274 Embryophyte View MSA
123381558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain