Gene : Cagra.1569s0006 C. grandiflora v1.1
Defline:  (1 of 4) PF05553//PF14364 - Cotton fibre expressed protein (DUF761) // Domain of unknown function (DUF4408) (DUF4408) Genomic Order:  6
Name:  ? Cagra.1569s0006 Secondary Identifier:  ? PAC:28913443
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1569s0006 0.5kb upstream 0.5kb upstream 1652 true Scaffold1569: 31189-32840 Capsella grandiflora
Cagra.1569s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold1569: 32341-32840 Capsella grandiflora
Cagra.1569s0006 0.5kb downstream 0.5kb downstream 1652 true Scaffold1569: 30689-32340 Capsella grandiflora
Cagra.1569s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold1569: 30689-31188 Capsella grandiflora
Cagra.1569s0006 1.0kb upstream 1.0kb upstream 2152 true Scaffold1569: 31189-33340 Capsella grandiflora
Cagra.1569s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold1569: 32341-33340 Capsella grandiflora
Cagra.1569s0006 1.0kb downstream 1.0kb downstream 2152 true Scaffold1569: 30189-32340 Capsella grandiflora
Cagra.1569s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold1569: 30189-31188 Capsella grandiflora
Cagra.1569s0006 2.0kb upstream 2.0kb upstream 3152 true Scaffold1569: 31189-34340 Capsella grandiflora
Cagra.1569s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold1569: 32341-34340 Capsella grandiflora
Cagra.1569s0006 2.0kb downstream 2.0kb downstream 3152 true Scaffold1569: 29189-32340 Capsella grandiflora
Cagra.1569s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold1569: 29189-31188 Capsella grandiflora
Cagra.1569s0006 5.0kb upstream 5.0kb upstream 6152 true Scaffold1569: 31189-37340 Capsella grandiflora
Cagra.1569s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold1569: 32341-37340 Capsella grandiflora
Cagra.1569s0006 5.0kb downstream 5.0kb downstream 6152 true Scaffold1569: 26189-32340 Capsella grandiflora
Cagra.1569s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold1569: 26189-31188 Capsella grandiflora
Cagra.1569s0006 10.0kb upstream 10.0kb upstream 11152 true Scaffold1569: 31189-42340 Capsella grandiflora
Cagra.1569s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold1569: 32341-42340 Capsella grandiflora
Cagra.1569s0006 10.0kb downstream 10.0kb downstream 11152 true Scaffold1569: 21189-32340 Capsella grandiflora
Cagra.1569s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold1569: 21189-31188 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376723 5261 Brassicaceae View MSA
123801334 5264 Brassicales-Malvales View MSA
124349814 5266 SBM View MSA
124244667 5268 Malvidae View MSA
124071784 5270 Rosid View MSA
123749105 5271 Pentapetalae View MSA
122787298 5272 Eudicot View MSA
122041618 5273 Angiosperm View MSA
121309871 5274 Embryophyte View MSA
123347511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain