Gene : Cagra.1511s0002 C. grandiflora v1.1
Defline:  (1 of 13) PF13963 - Transposase-associated domain (Transpos_assoc) Genomic Order:  2
Name:  ? Cagra.1511s0002 Secondary Identifier:  ? PAC:28901372
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1511s0002 0.5kb upstream 0.5kb upstream 743 true Scaffold1511: 3181-3923 Capsella grandiflora
Cagra.1511s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold1511: 3424-3923 Capsella grandiflora
Cagra.1511s0002 0.5kb downstream 0.5kb downstream 743 true Scaffold1511: 2681-3423 Capsella grandiflora
Cagra.1511s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold1511: 2681-3180 Capsella grandiflora
Cagra.1511s0002 1.0kb upstream 1.0kb upstream 1243 true Scaffold1511: 3181-4423 Capsella grandiflora
Cagra.1511s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold1511: 3424-4423 Capsella grandiflora
Cagra.1511s0002 1.0kb downstream 1.0kb downstream 1243 true Scaffold1511: 2181-3423 Capsella grandiflora
Cagra.1511s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold1511: 2181-3180 Capsella grandiflora
Cagra.1511s0002 2.0kb upstream 2.0kb upstream 2243 true Scaffold1511: 3181-5423 Capsella grandiflora
Cagra.1511s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold1511: 3424-5423 Capsella grandiflora
Cagra.1511s0002 2.0kb downstream 2.0kb downstream 2243 true Scaffold1511: 1181-3423 Capsella grandiflora
Cagra.1511s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold1511: 1181-3180 Capsella grandiflora
Cagra.1511s0002 5.0kb upstream 5.0kb upstream 5243 true Scaffold1511: 3181-8423 Capsella grandiflora
Cagra.1511s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold1511: 3424-8423 Capsella grandiflora
Cagra.1511s0002 5.0kb downstream 5.0kb downstream 3423 true Scaffold1511: 1-3423 Capsella grandiflora
Cagra.1511s0002 5.0kb downstream 5.0kb downstream 3180 false Scaffold1511: 1-3180 Capsella grandiflora
Cagra.1511s0002 10.0kb upstream 10.0kb upstream 10243 true Scaffold1511: 3181-13423 Capsella grandiflora
Cagra.1511s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold1511: 3424-13423 Capsella grandiflora
Cagra.1511s0002 10.0kb downstream 10.0kb downstream 3423 true Scaffold1511: 1-3423 Capsella grandiflora
Cagra.1511s0002 10.0kb downstream 10.0kb downstream 3180 false Scaffold1511: 1-3180 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332653 5261 Brassicaceae Singleton cluster - no MSA
123773702 5264 Brassicales-Malvales Singleton cluster - no MSA
124349714 5266 SBM View MSA
124245795 5268 Malvidae View MSA
124039032 5270 Rosid View MSA
123752947 5271 Pentapetalae View MSA
122774877 5272 Eudicot View MSA
122050110 5273 Angiosperm View MSA
121351710 5274 Embryophyte View MSA
123427809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain