Gene : Cagra.1699s0001 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22952:SF210 - DOG1 ALPHA SPLICE VARIANT Genomic Order:  1
Name:  ? Cagra.1699s0001 Secondary Identifier:  ? PAC:28915215
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1699s0001 0.5kb upstream 0.5kb upstream 1146 true Scaffold1699: 1-1146 Capsella grandiflora
Cagra.1699s0001 0.5kb upstream 0.5kb upstream 300 false Scaffold1699: 1-300 Capsella grandiflora
Cagra.1699s0001 0.5kb downstream 0.5kb downstream 1346 true Scaffold1699: 301-1646 Capsella grandiflora
Cagra.1699s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold1699: 1147-1646 Capsella grandiflora
Cagra.1699s0001 1.0kb upstream 1.0kb upstream 1146 true Scaffold1699: 1-1146 Capsella grandiflora
Cagra.1699s0001 1.0kb upstream 1.0kb upstream 300 false Scaffold1699: 1-300 Capsella grandiflora
Cagra.1699s0001 1.0kb downstream 1.0kb downstream 1846 true Scaffold1699: 301-2146 Capsella grandiflora
Cagra.1699s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold1699: 1147-2146 Capsella grandiflora
Cagra.1699s0001 2.0kb upstream 2.0kb upstream 1146 true Scaffold1699: 1-1146 Capsella grandiflora
Cagra.1699s0001 2.0kb upstream 2.0kb upstream 300 false Scaffold1699: 1-300 Capsella grandiflora
Cagra.1699s0001 2.0kb downstream 2.0kb downstream 2846 true Scaffold1699: 301-3146 Capsella grandiflora
Cagra.1699s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold1699: 1147-3146 Capsella grandiflora
Cagra.1699s0001 5.0kb upstream 5.0kb upstream 1146 true Scaffold1699: 1-1146 Capsella grandiflora
Cagra.1699s0001 5.0kb upstream 5.0kb upstream 300 false Scaffold1699: 1-300 Capsella grandiflora
Cagra.1699s0001 5.0kb downstream 5.0kb downstream 5846 true Scaffold1699: 301-6146 Capsella grandiflora
Cagra.1699s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold1699: 1147-6146 Capsella grandiflora
Cagra.1699s0001 10.0kb upstream 10.0kb upstream 1146 true Scaffold1699: 1-1146 Capsella grandiflora
Cagra.1699s0001 10.0kb upstream 10.0kb upstream 300 false Scaffold1699: 1-300 Capsella grandiflora
Cagra.1699s0001 10.0kb downstream 10.0kb downstream 8067 true Scaffold1699: 301-8367 Capsella grandiflora
Cagra.1699s0001 10.0kb downstream 10.0kb downstream 7221 false Scaffold1699: 1147-8367 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364818 5261 Brassicaceae View MSA
123798838 5264 Brassicales-Malvales View MSA
124296421 5266 SBM View MSA
124250601 5268 Malvidae View MSA
124070916 5270 Rosid View MSA
123746178 5271 Pentapetalae View MSA
122797836 5272 Eudicot View MSA
122044806 5273 Angiosperm View MSA
121350176 5274 Embryophyte View MSA
123381607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain