Gene : Cagra.2007s0007 C. grandiflora v1.1
Defline:  (1 of 3) PTHR14237:SF31 - CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING PROTEIN Genomic Order:  7
Name:  ? Cagra.2007s0007 Secondary Identifier:  ? PAC:28908621
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5963 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2007s0007 0.5kb upstream 0.5kb upstream 3104 true Scaffold2007: 13680-16783 Capsella grandiflora
Cagra.2007s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold2007: 16284-16783 Capsella grandiflora
Cagra.2007s0007 0.5kb downstream 0.5kb downstream 3104 true Scaffold2007: 13180-16283 Capsella grandiflora
Cagra.2007s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold2007: 13180-13679 Capsella grandiflora
Cagra.2007s0007 1.0kb upstream 1.0kb upstream 3604 true Scaffold2007: 13680-17283 Capsella grandiflora
Cagra.2007s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold2007: 16284-17283 Capsella grandiflora
Cagra.2007s0007 1.0kb downstream 1.0kb downstream 3604 true Scaffold2007: 12680-16283 Capsella grandiflora
Cagra.2007s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold2007: 12680-13679 Capsella grandiflora
Cagra.2007s0007 2.0kb upstream 2.0kb upstream 4604 true Scaffold2007: 13680-18283 Capsella grandiflora
Cagra.2007s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold2007: 16284-18283 Capsella grandiflora
Cagra.2007s0007 2.0kb downstream 2.0kb downstream 4604 true Scaffold2007: 11680-16283 Capsella grandiflora
Cagra.2007s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold2007: 11680-13679 Capsella grandiflora
Cagra.2007s0007 5.0kb upstream 5.0kb upstream 7604 true Scaffold2007: 13680-21283 Capsella grandiflora
Cagra.2007s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold2007: 16284-21283 Capsella grandiflora
Cagra.2007s0007 5.0kb downstream 5.0kb downstream 7604 true Scaffold2007: 8680-16283 Capsella grandiflora
Cagra.2007s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold2007: 8680-13679 Capsella grandiflora
Cagra.2007s0007 10.0kb upstream 10.0kb upstream 12604 true Scaffold2007: 13680-26283 Capsella grandiflora
Cagra.2007s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold2007: 16284-26283 Capsella grandiflora
Cagra.2007s0007 10.0kb downstream 10.0kb downstream 12604 true Scaffold2007: 3680-16283 Capsella grandiflora
Cagra.2007s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold2007: 3680-13679 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368216 5261 Brassicaceae View MSA
123840143 5264 Brassicales-Malvales View MSA
124343871 5266 SBM View MSA
124251405 5268 Malvidae View MSA
124071174 5270 Rosid View MSA
123739194 5271 Pentapetalae View MSA
122789460 5272 Eudicot View MSA
122047706 5273 Angiosperm View MSA
121350233 5274 Embryophyte View MSA
123381636 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain