Gene : Cagra.2179s0050 C. grandiflora v1.1
Defline:  (1 of 168) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  50
Name:  ? Cagra.2179s0050 Secondary Identifier:  ? PAC:28918652
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2179s0050 0.5kb upstream 0.5kb upstream 2486 true Scaffold2179: 177623-180108 Capsella grandiflora
Cagra.2179s0050 0.5kb upstream 0.5kb upstream 500 false Scaffold2179: 179609-180108 Capsella grandiflora
Cagra.2179s0050 0.5kb downstream 0.5kb downstream 2486 true Scaffold2179: 177123-179608 Capsella grandiflora
Cagra.2179s0050 0.5kb downstream 0.5kb downstream 500 false Scaffold2179: 177123-177622 Capsella grandiflora
Cagra.2179s0050 1.0kb upstream 1.0kb upstream 2986 true Scaffold2179: 177623-180608 Capsella grandiflora
Cagra.2179s0050 1.0kb upstream 1.0kb upstream 1000 false Scaffold2179: 179609-180608 Capsella grandiflora
Cagra.2179s0050 1.0kb downstream 1.0kb downstream 2986 true Scaffold2179: 176623-179608 Capsella grandiflora
Cagra.2179s0050 1.0kb downstream 1.0kb downstream 1000 false Scaffold2179: 176623-177622 Capsella grandiflora
Cagra.2179s0050 2.0kb upstream 2.0kb upstream 3986 true Scaffold2179: 177623-181608 Capsella grandiflora
Cagra.2179s0050 2.0kb upstream 2.0kb upstream 2000 false Scaffold2179: 179609-181608 Capsella grandiflora
Cagra.2179s0050 2.0kb downstream 2.0kb downstream 3986 true Scaffold2179: 175623-179608 Capsella grandiflora
Cagra.2179s0050 2.0kb downstream 2.0kb downstream 2000 false Scaffold2179: 175623-177622 Capsella grandiflora
Cagra.2179s0050 5.0kb upstream 5.0kb upstream 6986 true Scaffold2179: 177623-184608 Capsella grandiflora
Cagra.2179s0050 5.0kb upstream 5.0kb upstream 5000 false Scaffold2179: 179609-184608 Capsella grandiflora
Cagra.2179s0050 5.0kb downstream 5.0kb downstream 6986 true Scaffold2179: 172623-179608 Capsella grandiflora
Cagra.2179s0050 5.0kb downstream 5.0kb downstream 5000 false Scaffold2179: 172623-177622 Capsella grandiflora
Cagra.2179s0050 10.0kb upstream 10.0kb upstream 11986 true Scaffold2179: 177623-189608 Capsella grandiflora
Cagra.2179s0050 10.0kb upstream 10.0kb upstream 10000 false Scaffold2179: 179609-189608 Capsella grandiflora
Cagra.2179s0050 10.0kb downstream 10.0kb downstream 11986 true Scaffold2179: 167623-179608 Capsella grandiflora
Cagra.2179s0050 10.0kb downstream 10.0kb downstream 10000 false Scaffold2179: 167623-177622 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369440 5261 Brassicaceae View MSA
123836357 5264 Brassicales-Malvales View MSA
124338282 5266 SBM View MSA
124241782 5268 Malvidae View MSA
124066488 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain