Gene : Cagra.2350s0074 C. grandiflora v1.1
Defline:  (1 of 2) PTHR20861:SF1 - HOMOSERINE KINASE Genomic Order:  74
Name:  ? Cagra.2350s0074 Secondary Identifier:  ? PAC:28908772
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HOMOSER-THRESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-702 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2350s0074 0.5kb upstream 0.5kb upstream 1616 true Scaffold2350: 287162-288777 Capsella grandiflora
Cagra.2350s0074 0.5kb upstream 0.5kb upstream 500 false Scaffold2350: 287162-287661 Capsella grandiflora
Cagra.2350s0074 0.5kb downstream 0.5kb downstream 1616 true Scaffold2350: 287662-289277 Capsella grandiflora
Cagra.2350s0074 0.5kb downstream 0.5kb downstream 500 false Scaffold2350: 288778-289277 Capsella grandiflora
Cagra.2350s0074 1.0kb upstream 1.0kb upstream 2116 true Scaffold2350: 286662-288777 Capsella grandiflora
Cagra.2350s0074 1.0kb upstream 1.0kb upstream 1000 false Scaffold2350: 286662-287661 Capsella grandiflora
Cagra.2350s0074 1.0kb downstream 1.0kb downstream 2116 true Scaffold2350: 287662-289777 Capsella grandiflora
Cagra.2350s0074 1.0kb downstream 1.0kb downstream 1000 false Scaffold2350: 288778-289777 Capsella grandiflora
Cagra.2350s0074 2.0kb upstream 2.0kb upstream 3116 true Scaffold2350: 285662-288777 Capsella grandiflora
Cagra.2350s0074 2.0kb upstream 2.0kb upstream 2000 false Scaffold2350: 285662-287661 Capsella grandiflora
Cagra.2350s0074 2.0kb downstream 2.0kb downstream 3116 true Scaffold2350: 287662-290777 Capsella grandiflora
Cagra.2350s0074 2.0kb downstream 2.0kb downstream 2000 false Scaffold2350: 288778-290777 Capsella grandiflora
Cagra.2350s0074 5.0kb upstream 5.0kb upstream 6116 true Scaffold2350: 282662-288777 Capsella grandiflora
Cagra.2350s0074 5.0kb upstream 5.0kb upstream 5000 false Scaffold2350: 282662-287661 Capsella grandiflora
Cagra.2350s0074 5.0kb downstream 5.0kb downstream 6116 true Scaffold2350: 287662-293777 Capsella grandiflora
Cagra.2350s0074 5.0kb downstream 5.0kb downstream 5000 false Scaffold2350: 288778-293777 Capsella grandiflora
Cagra.2350s0074 10.0kb upstream 10.0kb upstream 11116 true Scaffold2350: 277662-288777 Capsella grandiflora
Cagra.2350s0074 10.0kb upstream 10.0kb upstream 10000 false Scaffold2350: 277662-287661 Capsella grandiflora
Cagra.2350s0074 10.0kb downstream 10.0kb downstream 11116 true Scaffold2350: 287662-298777 Capsella grandiflora
Cagra.2350s0074 10.0kb downstream 10.0kb downstream 10000 false Scaffold2350: 288778-298777 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343765 5261 Brassicaceae View MSA
123783869 5264 Brassicales-Malvales View MSA
124282079 5266 SBM View MSA
124249755 5268 Malvidae View MSA
124063769 5270 Rosid View MSA
123740380 5271 Pentapetalae View MSA
122792807 5272 Eudicot View MSA
122044756 5273 Angiosperm View MSA
121343956 5274 Embryophyte View MSA
123424273 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain