Gene : Cagra.26578s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11403 - CYTOCHROME C OXIDASE SUBUNIT III Genomic Order:  4
Name:  ? Cagra.26578s0004 Secondary Identifier:  ? PAC:28897633
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-7279 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.26578s0004 0.5kb upstream 0.5kb upstream 1693 true Scaffold26578: 8291-9983 Capsella grandiflora
Cagra.26578s0004 0.5kb upstream 0.5kb upstream 13 false Scaffold26578: 9971-9983 Capsella grandiflora
Cagra.26578s0004 0.5kb downstream 0.5kb downstream 2180 true Scaffold26578: 7791-9970 Capsella grandiflora
Cagra.26578s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold26578: 7791-8290 Capsella grandiflora
Cagra.26578s0004 1.0kb upstream 1.0kb upstream 1693 true Scaffold26578: 8291-9983 Capsella grandiflora
Cagra.26578s0004 1.0kb upstream 1.0kb upstream 13 false Scaffold26578: 9971-9983 Capsella grandiflora
Cagra.26578s0004 1.0kb downstream 1.0kb downstream 2680 true Scaffold26578: 7291-9970 Capsella grandiflora
Cagra.26578s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold26578: 7291-8290 Capsella grandiflora
Cagra.26578s0004 2.0kb upstream 2.0kb upstream 1693 true Scaffold26578: 8291-9983 Capsella grandiflora
Cagra.26578s0004 2.0kb upstream 2.0kb upstream 13 false Scaffold26578: 9971-9983 Capsella grandiflora
Cagra.26578s0004 2.0kb downstream 2.0kb downstream 3680 true Scaffold26578: 6291-9970 Capsella grandiflora
Cagra.26578s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold26578: 6291-8290 Capsella grandiflora
Cagra.26578s0004 5.0kb upstream 5.0kb upstream 1693 true Scaffold26578: 8291-9983 Capsella grandiflora
Cagra.26578s0004 5.0kb upstream 5.0kb upstream 13 false Scaffold26578: 9971-9983 Capsella grandiflora
Cagra.26578s0004 5.0kb downstream 5.0kb downstream 6680 true Scaffold26578: 3291-9970 Capsella grandiflora
Cagra.26578s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold26578: 3291-8290 Capsella grandiflora
Cagra.26578s0004 10.0kb upstream 10.0kb upstream 1693 true Scaffold26578: 8291-9983 Capsella grandiflora
Cagra.26578s0004 10.0kb upstream 10.0kb upstream 13 false Scaffold26578: 9971-9983 Capsella grandiflora
Cagra.26578s0004 10.0kb downstream 10.0kb downstream 9970 true Scaffold26578: 1-9970 Capsella grandiflora
Cagra.26578s0004 10.0kb downstream 10.0kb downstream 8290 false Scaffold26578: 1-8290 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375680 5261 Brassicaceae View MSA
123835070 5264 Brassicales-Malvales View MSA
124322001 5266 SBM View MSA
124245216 5268 Malvidae View MSA
124037306 5270 Rosid View MSA
123753546 5271 Pentapetalae View MSA
122786162 5272 Eudicot View MSA
122050963 5273 Angiosperm View MSA
121348326 5274 Embryophyte View MSA
123426097 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain