Gene : Cagra.3060s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31517:SF11 - PEROXIDASE 31-RELATED Genomic Order:  6
Name:  ? Cagra.3060s0006 Secondary Identifier:  ? PAC:28910613
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  
Cgrandiflora PWY-7214 Capsella grandiflora pathologic  
Cgrandiflora PWY-7445 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3060s0006 0.5kb upstream 0.5kb upstream 1493 true Scaffold3060: 30747-32239 Capsella grandiflora
Cagra.3060s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold3060: 30747-31246 Capsella grandiflora
Cagra.3060s0006 0.5kb downstream 0.5kb downstream 1493 true Scaffold3060: 31247-32739 Capsella grandiflora
Cagra.3060s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold3060: 32240-32739 Capsella grandiflora
Cagra.3060s0006 1.0kb upstream 1.0kb upstream 1993 true Scaffold3060: 30247-32239 Capsella grandiflora
Cagra.3060s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold3060: 30247-31246 Capsella grandiflora
Cagra.3060s0006 1.0kb downstream 1.0kb downstream 1993 true Scaffold3060: 31247-33239 Capsella grandiflora
Cagra.3060s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold3060: 32240-33239 Capsella grandiflora
Cagra.3060s0006 2.0kb upstream 2.0kb upstream 2993 true Scaffold3060: 29247-32239 Capsella grandiflora
Cagra.3060s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold3060: 29247-31246 Capsella grandiflora
Cagra.3060s0006 2.0kb downstream 2.0kb downstream 2782 true Scaffold3060: 31247-34028 Capsella grandiflora
Cagra.3060s0006 2.0kb downstream 2.0kb downstream 1789 false Scaffold3060: 32240-34028 Capsella grandiflora
Cagra.3060s0006 5.0kb upstream 5.0kb upstream 5993 true Scaffold3060: 26247-32239 Capsella grandiflora
Cagra.3060s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold3060: 26247-31246 Capsella grandiflora
Cagra.3060s0006 5.0kb downstream 5.0kb downstream 2782 true Scaffold3060: 31247-34028 Capsella grandiflora
Cagra.3060s0006 5.0kb downstream 5.0kb downstream 1789 false Scaffold3060: 32240-34028 Capsella grandiflora
Cagra.3060s0006 10.0kb upstream 10.0kb upstream 10993 true Scaffold3060: 21247-32239 Capsella grandiflora
Cagra.3060s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold3060: 21247-31246 Capsella grandiflora
Cagra.3060s0006 10.0kb downstream 10.0kb downstream 2782 true Scaffold3060: 31247-34028 Capsella grandiflora
Cagra.3060s0006 10.0kb downstream 10.0kb downstream 1789 false Scaffold3060: 32240-34028 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365146 5261 Brassicaceae View MSA
123839125 5264 Brassicales-Malvales View MSA
124339069 5266 SBM View MSA
124243658 5268 Malvidae View MSA
124069813 5270 Rosid View MSA
123741716 5271 Pentapetalae View MSA
122795989 5272 Eudicot View MSA
122048017 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain