Gene : Cagra.0301s0003 C. grandiflora v1.1
Defline:  (1 of 33) PF05678 - VQ motif (VQ) Genomic Order:  3
Name:  ? Cagra.0301s0003 Secondary Identifier:  ? PAC:28907769
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0301s0003 0.5kb upstream 0.5kb upstream 1094 true Scaffold301: 6130-7223 Capsella grandiflora
Cagra.0301s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold301: 6130-6629 Capsella grandiflora
Cagra.0301s0003 0.5kb downstream 0.5kb downstream 1094 true Scaffold301: 6630-7723 Capsella grandiflora
Cagra.0301s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold301: 7224-7723 Capsella grandiflora
Cagra.0301s0003 1.0kb upstream 1.0kb upstream 1594 true Scaffold301: 5630-7223 Capsella grandiflora
Cagra.0301s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold301: 5630-6629 Capsella grandiflora
Cagra.0301s0003 1.0kb downstream 1.0kb downstream 1594 true Scaffold301: 6630-8223 Capsella grandiflora
Cagra.0301s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold301: 7224-8223 Capsella grandiflora
Cagra.0301s0003 2.0kb upstream 2.0kb upstream 2594 true Scaffold301: 4630-7223 Capsella grandiflora
Cagra.0301s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold301: 4630-6629 Capsella grandiflora
Cagra.0301s0003 2.0kb downstream 2.0kb downstream 2594 true Scaffold301: 6630-9223 Capsella grandiflora
Cagra.0301s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold301: 7224-9223 Capsella grandiflora
Cagra.0301s0003 5.0kb upstream 5.0kb upstream 5594 true Scaffold301: 1630-7223 Capsella grandiflora
Cagra.0301s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold301: 1630-6629 Capsella grandiflora
Cagra.0301s0003 5.0kb downstream 5.0kb downstream 5594 true Scaffold301: 6630-12223 Capsella grandiflora
Cagra.0301s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold301: 7224-12223 Capsella grandiflora
Cagra.0301s0003 10.0kb upstream 10.0kb upstream 7223 true Scaffold301: 1-7223 Capsella grandiflora
Cagra.0301s0003 10.0kb upstream 10.0kb upstream 6629 false Scaffold301: 1-6629 Capsella grandiflora
Cagra.0301s0003 10.0kb downstream 10.0kb downstream 10594 true Scaffold301: 6630-17223 Capsella grandiflora
Cagra.0301s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold301: 7224-17223 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364846 5261 Brassicaceae View MSA
123798846 5264 Brassicales-Malvales View MSA
124296429 5266 SBM View MSA
124255645 5268 Malvidae View MSA
124073802 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain