Gene : Cagra.0003s0001 C. grandiflora v1.1
Defline:  (1 of 2) PF07014 - Hs1pro-1 protein C-terminus (Hs1pro-1_C) Genomic Order:  1
Name:  ? Cagra.0003s0001 Secondary Identifier:  ? PAC:28913302
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0003s0001 0.5kb upstream 0.5kb upstream 1796 true Scaffold3: 1210-3005 Capsella grandiflora
Cagra.0003s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3: 1210-1709 Capsella grandiflora
Cagra.0003s0001 0.5kb downstream 0.5kb downstream 1796 true Scaffold3: 1710-3505 Capsella grandiflora
Cagra.0003s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3: 3006-3505 Capsella grandiflora
Cagra.0003s0001 1.0kb upstream 1.0kb upstream 2296 true Scaffold3: 710-3005 Capsella grandiflora
Cagra.0003s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3: 710-1709 Capsella grandiflora
Cagra.0003s0001 1.0kb downstream 1.0kb downstream 2296 true Scaffold3: 1710-4005 Capsella grandiflora
Cagra.0003s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3: 3006-4005 Capsella grandiflora
Cagra.0003s0001 2.0kb upstream 2.0kb upstream 3005 true Scaffold3: 1-3005 Capsella grandiflora
Cagra.0003s0001 2.0kb upstream 2.0kb upstream 1709 false Scaffold3: 1-1709 Capsella grandiflora
Cagra.0003s0001 2.0kb downstream 2.0kb downstream 3296 true Scaffold3: 1710-5005 Capsella grandiflora
Cagra.0003s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3: 3006-5005 Capsella grandiflora
Cagra.0003s0001 5.0kb upstream 5.0kb upstream 3005 true Scaffold3: 1-3005 Capsella grandiflora
Cagra.0003s0001 5.0kb upstream 5.0kb upstream 1709 false Scaffold3: 1-1709 Capsella grandiflora
Cagra.0003s0001 5.0kb downstream 5.0kb downstream 6296 true Scaffold3: 1710-8005 Capsella grandiflora
Cagra.0003s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3: 3006-8005 Capsella grandiflora
Cagra.0003s0001 10.0kb upstream 10.0kb upstream 3005 true Scaffold3: 1-3005 Capsella grandiflora
Cagra.0003s0001 10.0kb upstream 10.0kb upstream 1709 false Scaffold3: 1-1709 Capsella grandiflora
Cagra.0003s0001 10.0kb downstream 10.0kb downstream 11296 true Scaffold3: 1710-13005 Capsella grandiflora
Cagra.0003s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold3: 3006-13005 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367849 5261 Brassicaceae View MSA
123799432 5264 Brassicales-Malvales View MSA
124296953 5266 SBM View MSA
124148968 5268 Malvidae View MSA
123874866 5270 Rosid View MSA
123458780 5271 Pentapetalae View MSA
122494178 5272 Eudicot View MSA
122043569 5273 Angiosperm View MSA
121344481 5274 Embryophyte View MSA
123380055 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain