Gene : Cagra.0448s0011 C. grandiflora v1.1
Defline:  (1 of 2) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN Genomic Order:  11
Name:  ? Cagra.0448s0011 Secondary Identifier:  ? PAC:28906311
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0448s0011 0.5kb upstream 0.5kb upstream 1730 true Scaffold448: 41234-42963 Capsella grandiflora
Cagra.0448s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold448: 42464-42963 Capsella grandiflora
Cagra.0448s0011 0.5kb downstream 0.5kb downstream 1730 true Scaffold448: 40734-42463 Capsella grandiflora
Cagra.0448s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold448: 40734-41233 Capsella grandiflora
Cagra.0448s0011 1.0kb upstream 1.0kb upstream 2230 true Scaffold448: 41234-43463 Capsella grandiflora
Cagra.0448s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold448: 42464-43463 Capsella grandiflora
Cagra.0448s0011 1.0kb downstream 1.0kb downstream 2230 true Scaffold448: 40234-42463 Capsella grandiflora
Cagra.0448s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold448: 40234-41233 Capsella grandiflora
Cagra.0448s0011 2.0kb upstream 2.0kb upstream 3230 true Scaffold448: 41234-44463 Capsella grandiflora
Cagra.0448s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold448: 42464-44463 Capsella grandiflora
Cagra.0448s0011 2.0kb downstream 2.0kb downstream 3230 true Scaffold448: 39234-42463 Capsella grandiflora
Cagra.0448s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold448: 39234-41233 Capsella grandiflora
Cagra.0448s0011 5.0kb upstream 5.0kb upstream 6230 true Scaffold448: 41234-47463 Capsella grandiflora
Cagra.0448s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold448: 42464-47463 Capsella grandiflora
Cagra.0448s0011 5.0kb downstream 5.0kb downstream 6230 true Scaffold448: 36234-42463 Capsella grandiflora
Cagra.0448s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold448: 36234-41233 Capsella grandiflora
Cagra.0448s0011 10.0kb upstream 10.0kb upstream 11230 true Scaffold448: 41234-52463 Capsella grandiflora
Cagra.0448s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold448: 42464-52463 Capsella grandiflora
Cagra.0448s0011 10.0kb downstream 10.0kb downstream 11230 true Scaffold448: 31234-42463 Capsella grandiflora
Cagra.0448s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold448: 31234-41233 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374512 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain