Gene : Cagra.0448s0024 C. grandiflora v1.1
Defline:  (1 of 11) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  24
Name:  ? Cagra.0448s0024 Secondary Identifier:  ? PAC:28906337
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0448s0024 0.5kb upstream 0.5kb upstream 2354 true Scaffold448: 85358-87711 Capsella grandiflora
Cagra.0448s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold448: 87212-87711 Capsella grandiflora
Cagra.0448s0024 0.5kb downstream 0.5kb downstream 2354 true Scaffold448: 84858-87211 Capsella grandiflora
Cagra.0448s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold448: 84858-85357 Capsella grandiflora
Cagra.0448s0024 1.0kb upstream 1.0kb upstream 2854 true Scaffold448: 85358-88211 Capsella grandiflora
Cagra.0448s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold448: 87212-88211 Capsella grandiflora
Cagra.0448s0024 1.0kb downstream 1.0kb downstream 2854 true Scaffold448: 84358-87211 Capsella grandiflora
Cagra.0448s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold448: 84358-85357 Capsella grandiflora
Cagra.0448s0024 2.0kb upstream 2.0kb upstream 3854 true Scaffold448: 85358-89211 Capsella grandiflora
Cagra.0448s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold448: 87212-89211 Capsella grandiflora
Cagra.0448s0024 2.0kb downstream 2.0kb downstream 3854 true Scaffold448: 83358-87211 Capsella grandiflora
Cagra.0448s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold448: 83358-85357 Capsella grandiflora
Cagra.0448s0024 5.0kb upstream 5.0kb upstream 6854 true Scaffold448: 85358-92211 Capsella grandiflora
Cagra.0448s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold448: 87212-92211 Capsella grandiflora
Cagra.0448s0024 5.0kb downstream 5.0kb downstream 6854 true Scaffold448: 80358-87211 Capsella grandiflora
Cagra.0448s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold448: 80358-85357 Capsella grandiflora
Cagra.0448s0024 10.0kb upstream 10.0kb upstream 11854 true Scaffold448: 85358-97211 Capsella grandiflora
Cagra.0448s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold448: 87212-97211 Capsella grandiflora
Cagra.0448s0024 10.0kb downstream 10.0kb downstream 11854 true Scaffold448: 75358-87211 Capsella grandiflora
Cagra.0448s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold448: 75358-85357 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122363885 5261 Brassicaceae View MSA
123831367 5264 Brassicales-Malvales View MSA
124345335 5266 SBM View MSA
124239641 5268 Malvidae View MSA
124062033 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain