Gene : Cagra.0053s0001 C. grandiflora v1.1
Defline:  (1 of 6) PTHR15316 - SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED Genomic Order:  1
Name:  ? Cagra.0053s0001 Secondary Identifier:  ? PAC:28907008
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0053s0001 0.5kb upstream 0.5kb upstream 1160 true Scaffold53: 226-1385 Capsella grandiflora
Cagra.0053s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold53: 886-1385 Capsella grandiflora
Cagra.0053s0001 0.5kb downstream 0.5kb downstream 885 true Scaffold53: 1-885 Capsella grandiflora
Cagra.0053s0001 0.5kb downstream 0.5kb downstream 225 false Scaffold53: 1-225 Capsella grandiflora
Cagra.0053s0001 1.0kb upstream 1.0kb upstream 1660 true Scaffold53: 226-1885 Capsella grandiflora
Cagra.0053s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold53: 886-1885 Capsella grandiflora
Cagra.0053s0001 1.0kb downstream 1.0kb downstream 885 true Scaffold53: 1-885 Capsella grandiflora
Cagra.0053s0001 1.0kb downstream 1.0kb downstream 225 false Scaffold53: 1-225 Capsella grandiflora
Cagra.0053s0001 2.0kb upstream 2.0kb upstream 2660 true Scaffold53: 226-2885 Capsella grandiflora
Cagra.0053s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold53: 886-2885 Capsella grandiflora
Cagra.0053s0001 2.0kb downstream 2.0kb downstream 885 true Scaffold53: 1-885 Capsella grandiflora
Cagra.0053s0001 2.0kb downstream 2.0kb downstream 225 false Scaffold53: 1-225 Capsella grandiflora
Cagra.0053s0001 5.0kb upstream 5.0kb upstream 5660 true Scaffold53: 226-5885 Capsella grandiflora
Cagra.0053s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold53: 886-5885 Capsella grandiflora
Cagra.0053s0001 5.0kb downstream 5.0kb downstream 885 true Scaffold53: 1-885 Capsella grandiflora
Cagra.0053s0001 5.0kb downstream 5.0kb downstream 225 false Scaffold53: 1-225 Capsella grandiflora
Cagra.0053s0001 10.0kb upstream 10.0kb upstream 10660 true Scaffold53: 226-10885 Capsella grandiflora
Cagra.0053s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold53: 886-10885 Capsella grandiflora
Cagra.0053s0001 10.0kb downstream 10.0kb downstream 885 true Scaffold53: 1-885 Capsella grandiflora
Cagra.0053s0001 10.0kb downstream 10.0kb downstream 225 false Scaffold53: 1-225 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121579359 5273 Angiosperm View MSA
122333926 5261 Brassicaceae Singleton cluster - no MSA
123774820 5264 Brassicales-Malvales Singleton cluster - no MSA
124273242 5266 SBM Singleton cluster - no MSA
124249785 5268 Malvidae View MSA
123952422 5270 Rosid View MSA
123530217 5271 Pentapetalae View MSA
122565187 5272 Eudicot View MSA
120851822 5274 Embryophyte View MSA
122892988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain