Gene : Cagra.3132s0025 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31311:SF4 - GLYCOSYLTRANSFERASE 3-RELATED Genomic Order:  25
Name:  ? Cagra.3132s0025 Secondary Identifier:  ? PAC:28904879
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5936 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3132s0025 0.5kb upstream 0.5kb upstream 2435 true Scaffold3132: 78392-80826 Capsella grandiflora
Cagra.3132s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold3132: 78392-78891 Capsella grandiflora
Cagra.3132s0025 0.5kb downstream 0.5kb downstream 2435 true Scaffold3132: 78892-81326 Capsella grandiflora
Cagra.3132s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold3132: 80827-81326 Capsella grandiflora
Cagra.3132s0025 1.0kb upstream 1.0kb upstream 2935 true Scaffold3132: 77892-80826 Capsella grandiflora
Cagra.3132s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold3132: 77892-78891 Capsella grandiflora
Cagra.3132s0025 1.0kb downstream 1.0kb downstream 2935 true Scaffold3132: 78892-81826 Capsella grandiflora
Cagra.3132s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold3132: 80827-81826 Capsella grandiflora
Cagra.3132s0025 2.0kb upstream 2.0kb upstream 3935 true Scaffold3132: 76892-80826 Capsella grandiflora
Cagra.3132s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold3132: 76892-78891 Capsella grandiflora
Cagra.3132s0025 2.0kb downstream 2.0kb downstream 3935 true Scaffold3132: 78892-82826 Capsella grandiflora
Cagra.3132s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold3132: 80827-82826 Capsella grandiflora
Cagra.3132s0025 5.0kb upstream 5.0kb upstream 6935 true Scaffold3132: 73892-80826 Capsella grandiflora
Cagra.3132s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold3132: 73892-78891 Capsella grandiflora
Cagra.3132s0025 5.0kb downstream 5.0kb downstream 6935 true Scaffold3132: 78892-85826 Capsella grandiflora
Cagra.3132s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold3132: 80827-85826 Capsella grandiflora
Cagra.3132s0025 10.0kb upstream 10.0kb upstream 11935 true Scaffold3132: 68892-80826 Capsella grandiflora
Cagra.3132s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold3132: 68892-78891 Capsella grandiflora
Cagra.3132s0025 10.0kb downstream 10.0kb downstream 11935 true Scaffold3132: 78892-90826 Capsella grandiflora
Cagra.3132s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold3132: 80827-90826 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374059 5261 Brassicaceae View MSA
123839780 5264 Brassicales-Malvales View MSA
124338371 5266 SBM View MSA
124251626 5268 Malvidae View MSA
124066918 5270 Rosid View MSA
123741049 5271 Pentapetalae View MSA
122787674 5272 Eudicot View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain