Gene : Cagra.0352s0033 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  33
Name:  ? Cagra.0352s0033 Secondary Identifier:  ? PAC:28897294
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0352s0033 0.5kb upstream 0.5kb upstream 3352 true Scaffold352: 131336-134687 Capsella grandiflora
Cagra.0352s0033 0.5kb upstream 0.5kb upstream 500 false Scaffold352: 131336-131835 Capsella grandiflora
Cagra.0352s0033 0.5kb downstream 0.5kb downstream 3352 true Scaffold352: 131836-135187 Capsella grandiflora
Cagra.0352s0033 0.5kb downstream 0.5kb downstream 500 false Scaffold352: 134688-135187 Capsella grandiflora
Cagra.0352s0033 1.0kb upstream 1.0kb upstream 3852 true Scaffold352: 130836-134687 Capsella grandiflora
Cagra.0352s0033 1.0kb upstream 1.0kb upstream 1000 false Scaffold352: 130836-131835 Capsella grandiflora
Cagra.0352s0033 1.0kb downstream 1.0kb downstream 3852 true Scaffold352: 131836-135687 Capsella grandiflora
Cagra.0352s0033 1.0kb downstream 1.0kb downstream 1000 false Scaffold352: 134688-135687 Capsella grandiflora
Cagra.0352s0033 2.0kb upstream 2.0kb upstream 4852 true Scaffold352: 129836-134687 Capsella grandiflora
Cagra.0352s0033 2.0kb upstream 2.0kb upstream 2000 false Scaffold352: 129836-131835 Capsella grandiflora
Cagra.0352s0033 2.0kb downstream 2.0kb downstream 4852 true Scaffold352: 131836-136687 Capsella grandiflora
Cagra.0352s0033 2.0kb downstream 2.0kb downstream 2000 false Scaffold352: 134688-136687 Capsella grandiflora
Cagra.0352s0033 5.0kb upstream 5.0kb upstream 7852 true Scaffold352: 126836-134687 Capsella grandiflora
Cagra.0352s0033 5.0kb upstream 5.0kb upstream 5000 false Scaffold352: 126836-131835 Capsella grandiflora
Cagra.0352s0033 5.0kb downstream 5.0kb downstream 7852 true Scaffold352: 131836-139687 Capsella grandiflora
Cagra.0352s0033 5.0kb downstream 5.0kb downstream 5000 false Scaffold352: 134688-139687 Capsella grandiflora
Cagra.0352s0033 10.0kb upstream 10.0kb upstream 12852 true Scaffold352: 121836-134687 Capsella grandiflora
Cagra.0352s0033 10.0kb upstream 10.0kb upstream 10000 false Scaffold352: 121836-131835 Capsella grandiflora
Cagra.0352s0033 10.0kb downstream 10.0kb downstream 12852 true Scaffold352: 131836-144687 Capsella grandiflora
Cagra.0352s0033 10.0kb downstream 10.0kb downstream 10000 false Scaffold352: 134688-144687 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376265 5261 Brassicaceae View MSA
123837177 5264 Brassicales-Malvales View MSA
124340827 5266 SBM View MSA
124238713 5268 Malvidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain