Gene : Cagra.0389s0002 C. grandiflora v1.1
Defline:  (1 of 3) PTHR33133:SF5 - EXPRESSED PROTEIN Genomic Order:  2
Name:  ? Cagra.0389s0002 Secondary Identifier:  ? PAC:28916359
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0389s0002 0.5kb upstream 0.5kb upstream 1817 true Scaffold389: 1323-3139 Capsella grandiflora
Cagra.0389s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold389: 1323-1822 Capsella grandiflora
Cagra.0389s0002 0.5kb downstream 0.5kb downstream 1817 true Scaffold389: 1823-3639 Capsella grandiflora
Cagra.0389s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold389: 3140-3639 Capsella grandiflora
Cagra.0389s0002 1.0kb upstream 1.0kb upstream 2317 true Scaffold389: 823-3139 Capsella grandiflora
Cagra.0389s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold389: 823-1822 Capsella grandiflora
Cagra.0389s0002 1.0kb downstream 1.0kb downstream 2317 true Scaffold389: 1823-4139 Capsella grandiflora
Cagra.0389s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold389: 3140-4139 Capsella grandiflora
Cagra.0389s0002 2.0kb upstream 2.0kb upstream 3139 true Scaffold389: 1-3139 Capsella grandiflora
Cagra.0389s0002 2.0kb upstream 2.0kb upstream 1822 false Scaffold389: 1-1822 Capsella grandiflora
Cagra.0389s0002 2.0kb downstream 2.0kb downstream 3317 true Scaffold389: 1823-5139 Capsella grandiflora
Cagra.0389s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold389: 3140-5139 Capsella grandiflora
Cagra.0389s0002 5.0kb upstream 5.0kb upstream 3139 true Scaffold389: 1-3139 Capsella grandiflora
Cagra.0389s0002 5.0kb upstream 5.0kb upstream 1822 false Scaffold389: 1-1822 Capsella grandiflora
Cagra.0389s0002 5.0kb downstream 5.0kb downstream 6317 true Scaffold389: 1823-8139 Capsella grandiflora
Cagra.0389s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold389: 3140-8139 Capsella grandiflora
Cagra.0389s0002 10.0kb upstream 10.0kb upstream 3139 true Scaffold389: 1-3139 Capsella grandiflora
Cagra.0389s0002 10.0kb upstream 10.0kb upstream 1822 false Scaffold389: 1-1822 Capsella grandiflora
Cagra.0389s0002 10.0kb downstream 10.0kb downstream 11317 true Scaffold389: 1823-13139 Capsella grandiflora
Cagra.0389s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold389: 3140-13139 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378206 5261 Brassicaceae View MSA
123834577 5264 Brassicales-Malvales View MSA
124344793 5266 SBM View MSA
124252340 5268 Malvidae View MSA
124072395 5270 Rosid View MSA
123752432 5271 Pentapetalae View MSA
122795545 5272 Eudicot View MSA
122047131 5273 Angiosperm View MSA
121347581 5274 Embryophyte View MSA
123380576 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain