Gene : Cagra.4006s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Genomic Order:  6
Name:  ? Cagra.4006s0006 Secondary Identifier:  ? PAC:28913406
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4006s0006 0.5kb upstream 0.5kb upstream 1826 true Scaffold4006: 18049-19874 Capsella grandiflora
Cagra.4006s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4006: 18049-18548 Capsella grandiflora
Cagra.4006s0006 0.5kb downstream 0.5kb downstream 1826 true Scaffold4006: 18549-20374 Capsella grandiflora
Cagra.4006s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4006: 19875-20374 Capsella grandiflora
Cagra.4006s0006 1.0kb upstream 1.0kb upstream 2326 true Scaffold4006: 17549-19874 Capsella grandiflora
Cagra.4006s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4006: 17549-18548 Capsella grandiflora
Cagra.4006s0006 1.0kb downstream 1.0kb downstream 2326 true Scaffold4006: 18549-20874 Capsella grandiflora
Cagra.4006s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4006: 19875-20874 Capsella grandiflora
Cagra.4006s0006 2.0kb upstream 2.0kb upstream 3326 true Scaffold4006: 16549-19874 Capsella grandiflora
Cagra.4006s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4006: 16549-18548 Capsella grandiflora
Cagra.4006s0006 2.0kb downstream 2.0kb downstream 3326 true Scaffold4006: 18549-21874 Capsella grandiflora
Cagra.4006s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4006: 19875-21874 Capsella grandiflora
Cagra.4006s0006 5.0kb upstream 5.0kb upstream 6326 true Scaffold4006: 13549-19874 Capsella grandiflora
Cagra.4006s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4006: 13549-18548 Capsella grandiflora
Cagra.4006s0006 5.0kb downstream 5.0kb downstream 6326 true Scaffold4006: 18549-24874 Capsella grandiflora
Cagra.4006s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4006: 19875-24874 Capsella grandiflora
Cagra.4006s0006 10.0kb upstream 10.0kb upstream 11326 true Scaffold4006: 8549-19874 Capsella grandiflora
Cagra.4006s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4006: 8549-18548 Capsella grandiflora
Cagra.4006s0006 10.0kb downstream 10.0kb downstream 11326 true Scaffold4006: 18549-29874 Capsella grandiflora
Cagra.4006s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4006: 19875-29874 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376241 5261 Brassicaceae View MSA
123840580 5264 Brassicales-Malvales View MSA
124349479 5266 SBM View MSA
124239671 5268 Malvidae View MSA
124071725 5270 Rosid View MSA
123745197 5271 Pentapetalae View MSA
122794608 5272 Eudicot View MSA
122048508 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain