Gene : Cagra.3981s0001 C. grandiflora v1.1
Defline:  (1 of 3) PTHR15245:SF11 - PHOSPHATIDYLINOSITOL 3-KINASE-RELATED PROTEIN KINASE Genomic Order:  1
Name:  ? Cagra.3981s0001 Secondary Identifier:  ? PAC:28903896
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6351 Capsella grandiflora pathologic  
Cgrandiflora PWY-6352 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3981s0001 0.5kb upstream 0.5kb upstream 2222 true Scaffold3981: 1-2222 Capsella grandiflora
Cagra.3981s0001 0.5kb upstream 0.5kb upstream 269 false Scaffold3981: 1-269 Capsella grandiflora
Cagra.3981s0001 0.5kb downstream 0.5kb downstream 2453 true Scaffold3981: 270-2722 Capsella grandiflora
Cagra.3981s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3981: 2223-2722 Capsella grandiflora
Cagra.3981s0001 1.0kb upstream 1.0kb upstream 2222 true Scaffold3981: 1-2222 Capsella grandiflora
Cagra.3981s0001 1.0kb upstream 1.0kb upstream 269 false Scaffold3981: 1-269 Capsella grandiflora
Cagra.3981s0001 1.0kb downstream 1.0kb downstream 2953 true Scaffold3981: 270-3222 Capsella grandiflora
Cagra.3981s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3981: 2223-3222 Capsella grandiflora
Cagra.3981s0001 2.0kb upstream 2.0kb upstream 2222 true Scaffold3981: 1-2222 Capsella grandiflora
Cagra.3981s0001 2.0kb upstream 2.0kb upstream 269 false Scaffold3981: 1-269 Capsella grandiflora
Cagra.3981s0001 2.0kb downstream 2.0kb downstream 3953 true Scaffold3981: 270-4222 Capsella grandiflora
Cagra.3981s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3981: 2223-4222 Capsella grandiflora
Cagra.3981s0001 5.0kb upstream 5.0kb upstream 2222 true Scaffold3981: 1-2222 Capsella grandiflora
Cagra.3981s0001 5.0kb upstream 5.0kb upstream 269 false Scaffold3981: 1-269 Capsella grandiflora
Cagra.3981s0001 5.0kb downstream 5.0kb downstream 6953 true Scaffold3981: 270-7222 Capsella grandiflora
Cagra.3981s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3981: 2223-7222 Capsella grandiflora
Cagra.3981s0001 10.0kb upstream 10.0kb upstream 2222 true Scaffold3981: 1-2222 Capsella grandiflora
Cagra.3981s0001 10.0kb upstream 10.0kb upstream 269 false Scaffold3981: 1-269 Capsella grandiflora
Cagra.3981s0001 10.0kb downstream 10.0kb downstream 11953 true Scaffold3981: 270-12222 Capsella grandiflora
Cagra.3981s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold3981: 2223-12222 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370992 5261 Brassicaceae View MSA
123837986 5264 Brassicales-Malvales View MSA
124342146 5266 SBM View MSA
124253244 5268 Malvidae View MSA
124068330 5270 Rosid View MSA
123741800 5271 Pentapetalae View MSA
122793394 5272 Eudicot View MSA
122050959 5273 Angiosperm View MSA
121351687 5274 Embryophyte View MSA
123427554 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain