Gene : Cagra.4118s0006 C. grandiflora v1.1
Defline:  (1 of 5) PTHR32266:SF12 - NICOTIANAMINE SYNTHASE-RELATED Genomic Order:  6
Name:  ? Cagra.4118s0006 Secondary Identifier:  ? PAC:28898614
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5957 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4118s0006 0.5kb upstream 0.5kb upstream 1481 true Scaffold4118: 23035-24515 Capsella grandiflora
Cagra.4118s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4118: 24016-24515 Capsella grandiflora
Cagra.4118s0006 0.5kb downstream 0.5kb downstream 1481 true Scaffold4118: 22535-24015 Capsella grandiflora
Cagra.4118s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4118: 22535-23034 Capsella grandiflora
Cagra.4118s0006 1.0kb upstream 1.0kb upstream 1981 true Scaffold4118: 23035-25015 Capsella grandiflora
Cagra.4118s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4118: 24016-25015 Capsella grandiflora
Cagra.4118s0006 1.0kb downstream 1.0kb downstream 1981 true Scaffold4118: 22035-24015 Capsella grandiflora
Cagra.4118s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4118: 22035-23034 Capsella grandiflora
Cagra.4118s0006 2.0kb upstream 2.0kb upstream 2981 true Scaffold4118: 23035-26015 Capsella grandiflora
Cagra.4118s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4118: 24016-26015 Capsella grandiflora
Cagra.4118s0006 2.0kb downstream 2.0kb downstream 2981 true Scaffold4118: 21035-24015 Capsella grandiflora
Cagra.4118s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4118: 21035-23034 Capsella grandiflora
Cagra.4118s0006 5.0kb upstream 5.0kb upstream 5981 true Scaffold4118: 23035-29015 Capsella grandiflora
Cagra.4118s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4118: 24016-29015 Capsella grandiflora
Cagra.4118s0006 5.0kb downstream 5.0kb downstream 5981 true Scaffold4118: 18035-24015 Capsella grandiflora
Cagra.4118s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4118: 18035-23034 Capsella grandiflora
Cagra.4118s0006 10.0kb upstream 10.0kb upstream 10981 true Scaffold4118: 23035-34015 Capsella grandiflora
Cagra.4118s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4118: 24016-34015 Capsella grandiflora
Cagra.4118s0006 10.0kb downstream 10.0kb downstream 10981 true Scaffold4118: 13035-24015 Capsella grandiflora
Cagra.4118s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4118: 13035-23034 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375018 5261 Brassicaceae View MSA
123839156 5264 Brassicales-Malvales View MSA
124346963 5266 SBM View MSA
124238052 5268 Malvidae View MSA
124066045 5270 Rosid View MSA
123750791 5271 Pentapetalae View MSA
122792107 5272 Eudicot View MSA
122044478 5273 Angiosperm View MSA
121350055 5274 Embryophyte View MSA
123381558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain