Gene : Cagra.0534s0013 C. grandiflora v1.1
Defline:  (1 of 54) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  13
Name:  ? Cagra.0534s0013 Secondary Identifier:  ? PAC:28907660
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0534s0013 0.5kb upstream 0.5kb upstream 2365 true Scaffold534: 56526-58890 Capsella grandiflora
Cagra.0534s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold534: 58391-58890 Capsella grandiflora
Cagra.0534s0013 0.5kb downstream 0.5kb downstream 2365 true Scaffold534: 56026-58390 Capsella grandiflora
Cagra.0534s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold534: 56026-56525 Capsella grandiflora
Cagra.0534s0013 1.0kb upstream 1.0kb upstream 2865 true Scaffold534: 56526-59390 Capsella grandiflora
Cagra.0534s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold534: 58391-59390 Capsella grandiflora
Cagra.0534s0013 1.0kb downstream 1.0kb downstream 2865 true Scaffold534: 55526-58390 Capsella grandiflora
Cagra.0534s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold534: 55526-56525 Capsella grandiflora
Cagra.0534s0013 2.0kb upstream 2.0kb upstream 3865 true Scaffold534: 56526-60390 Capsella grandiflora
Cagra.0534s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold534: 58391-60390 Capsella grandiflora
Cagra.0534s0013 2.0kb downstream 2.0kb downstream 3865 true Scaffold534: 54526-58390 Capsella grandiflora
Cagra.0534s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold534: 54526-56525 Capsella grandiflora
Cagra.0534s0013 5.0kb upstream 5.0kb upstream 6865 true Scaffold534: 56526-63390 Capsella grandiflora
Cagra.0534s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold534: 58391-63390 Capsella grandiflora
Cagra.0534s0013 5.0kb downstream 5.0kb downstream 6865 true Scaffold534: 51526-58390 Capsella grandiflora
Cagra.0534s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold534: 51526-56525 Capsella grandiflora
Cagra.0534s0013 10.0kb upstream 10.0kb upstream 11865 true Scaffold534: 56526-68390 Capsella grandiflora
Cagra.0534s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold534: 58391-68390 Capsella grandiflora
Cagra.0534s0013 10.0kb downstream 10.0kb downstream 11865 true Scaffold534: 46526-58390 Capsella grandiflora
Cagra.0534s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold534: 46526-56525 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377914 5261 Brassicaceae View MSA
123841181 5264 Brassicales-Malvales View MSA
124347410 5266 SBM View MSA
124245481 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain