Gene : Cagra.4306s0017 C. grandiflora v1.1
Defline:  (1 of 54) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  17
Name:  ? Cagra.4306s0017 Secondary Identifier:  ? PAC:28916621
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4306s0017 0.5kb upstream 0.5kb upstream 3119 true Scaffold4306: 65611-68729 Capsella grandiflora
Cagra.4306s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold4306: 68230-68729 Capsella grandiflora
Cagra.4306s0017 0.5kb downstream 0.5kb downstream 3119 true Scaffold4306: 65111-68229 Capsella grandiflora
Cagra.4306s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold4306: 65111-65610 Capsella grandiflora
Cagra.4306s0017 1.0kb upstream 1.0kb upstream 3619 true Scaffold4306: 65611-69229 Capsella grandiflora
Cagra.4306s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold4306: 68230-69229 Capsella grandiflora
Cagra.4306s0017 1.0kb downstream 1.0kb downstream 3619 true Scaffold4306: 64611-68229 Capsella grandiflora
Cagra.4306s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold4306: 64611-65610 Capsella grandiflora
Cagra.4306s0017 2.0kb upstream 2.0kb upstream 4619 true Scaffold4306: 65611-70229 Capsella grandiflora
Cagra.4306s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold4306: 68230-70229 Capsella grandiflora
Cagra.4306s0017 2.0kb downstream 2.0kb downstream 4619 true Scaffold4306: 63611-68229 Capsella grandiflora
Cagra.4306s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold4306: 63611-65610 Capsella grandiflora
Cagra.4306s0017 5.0kb upstream 5.0kb upstream 7619 true Scaffold4306: 65611-73229 Capsella grandiflora
Cagra.4306s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold4306: 68230-73229 Capsella grandiflora
Cagra.4306s0017 5.0kb downstream 5.0kb downstream 7619 true Scaffold4306: 60611-68229 Capsella grandiflora
Cagra.4306s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold4306: 60611-65610 Capsella grandiflora
Cagra.4306s0017 10.0kb upstream 10.0kb upstream 10300 true Scaffold4306: 65611-75910 Capsella grandiflora
Cagra.4306s0017 10.0kb upstream 10.0kb upstream 7681 false Scaffold4306: 68230-75910 Capsella grandiflora
Cagra.4306s0017 10.0kb downstream 10.0kb downstream 12619 true Scaffold4306: 55611-68229 Capsella grandiflora
Cagra.4306s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold4306: 55611-65610 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367627 5261 Brassicaceae View MSA
123829331 5264 Brassicales-Malvales View MSA
124340788 5266 SBM View MSA
124242256 5268 Malvidae View MSA
124074740 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain