Gene : Cagra.4715s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31517:SF11 - PEROXIDASE 31-RELATED Genomic Order:  6
Name:  ? Cagra.4715s0006 Secondary Identifier:  ? PAC:28915734
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  
Cgrandiflora PWY-7214 Capsella grandiflora pathologic  
Cgrandiflora PWY-7445 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4715s0006 0.5kb upstream 0.5kb upstream 1997 true Scaffold4715: 11002-12998 Capsella grandiflora
Cagra.4715s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4715: 11002-11501 Capsella grandiflora
Cagra.4715s0006 0.5kb downstream 0.5kb downstream 1997 true Scaffold4715: 11502-13498 Capsella grandiflora
Cagra.4715s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4715: 12999-13498 Capsella grandiflora
Cagra.4715s0006 1.0kb upstream 1.0kb upstream 2497 true Scaffold4715: 10502-12998 Capsella grandiflora
Cagra.4715s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4715: 10502-11501 Capsella grandiflora
Cagra.4715s0006 1.0kb downstream 1.0kb downstream 2497 true Scaffold4715: 11502-13998 Capsella grandiflora
Cagra.4715s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4715: 12999-13998 Capsella grandiflora
Cagra.4715s0006 2.0kb upstream 2.0kb upstream 3497 true Scaffold4715: 9502-12998 Capsella grandiflora
Cagra.4715s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4715: 9502-11501 Capsella grandiflora
Cagra.4715s0006 2.0kb downstream 2.0kb downstream 3497 true Scaffold4715: 11502-14998 Capsella grandiflora
Cagra.4715s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4715: 12999-14998 Capsella grandiflora
Cagra.4715s0006 5.0kb upstream 5.0kb upstream 6497 true Scaffold4715: 6502-12998 Capsella grandiflora
Cagra.4715s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4715: 6502-11501 Capsella grandiflora
Cagra.4715s0006 5.0kb downstream 5.0kb downstream 6497 true Scaffold4715: 11502-17998 Capsella grandiflora
Cagra.4715s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4715: 12999-17998 Capsella grandiflora
Cagra.4715s0006 10.0kb upstream 10.0kb upstream 11497 true Scaffold4715: 1502-12998 Capsella grandiflora
Cagra.4715s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4715: 1502-11501 Capsella grandiflora
Cagra.4715s0006 10.0kb downstream 10.0kb downstream 11497 true Scaffold4715: 11502-22998 Capsella grandiflora
Cagra.4715s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4715: 12999-22998 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380418 5261 Brassicaceae View MSA
123835779 5264 Brassicales-Malvales View MSA
124346299 5266 SBM View MSA
124240815 5268 Malvidae View MSA
124069813 5270 Rosid View MSA
123741716 5271 Pentapetalae View MSA
122795989 5272 Eudicot View MSA
122048017 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain