Gene : Cagra.4643s0006 C. grandiflora v1.1
Defline:  (1 of 27) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  6
Name:  ? Cagra.4643s0006 Secondary Identifier:  ? PAC:28920154
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4643s0006 0.5kb upstream 0.5kb upstream 1163 true Scaffold4643: 23949-25111 Capsella grandiflora
Cagra.4643s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4643: 23949-24448 Capsella grandiflora
Cagra.4643s0006 0.5kb downstream 0.5kb downstream 1163 true Scaffold4643: 24449-25611 Capsella grandiflora
Cagra.4643s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4643: 25112-25611 Capsella grandiflora
Cagra.4643s0006 1.0kb upstream 1.0kb upstream 1663 true Scaffold4643: 23449-25111 Capsella grandiflora
Cagra.4643s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4643: 23449-24448 Capsella grandiflora
Cagra.4643s0006 1.0kb downstream 1.0kb downstream 1663 true Scaffold4643: 24449-26111 Capsella grandiflora
Cagra.4643s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4643: 25112-26111 Capsella grandiflora
Cagra.4643s0006 2.0kb upstream 2.0kb upstream 2663 true Scaffold4643: 22449-25111 Capsella grandiflora
Cagra.4643s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4643: 22449-24448 Capsella grandiflora
Cagra.4643s0006 2.0kb downstream 2.0kb downstream 2663 true Scaffold4643: 24449-27111 Capsella grandiflora
Cagra.4643s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4643: 25112-27111 Capsella grandiflora
Cagra.4643s0006 5.0kb upstream 5.0kb upstream 5663 true Scaffold4643: 19449-25111 Capsella grandiflora
Cagra.4643s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4643: 19449-24448 Capsella grandiflora
Cagra.4643s0006 5.0kb downstream 5.0kb downstream 5663 true Scaffold4643: 24449-30111 Capsella grandiflora
Cagra.4643s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4643: 25112-30111 Capsella grandiflora
Cagra.4643s0006 10.0kb upstream 10.0kb upstream 10663 true Scaffold4643: 14449-25111 Capsella grandiflora
Cagra.4643s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4643: 14449-24448 Capsella grandiflora
Cagra.4643s0006 10.0kb downstream 10.0kb downstream 10663 true Scaffold4643: 24449-35111 Capsella grandiflora
Cagra.4643s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4643: 25112-35111 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364049 5261 Brassicaceae View MSA
123834668 5264 Brassicales-Malvales View MSA
124346405 5266 SBM View MSA
124250331 5268 Malvidae View MSA
124069006 5270 Rosid View MSA
123747839 5271 Pentapetalae View MSA
122792637 5272 Eudicot View MSA
122050449 5273 Angiosperm View MSA
121311915 5274 Embryophyte View MSA
123349144 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain