Gene : Cagra.0716s0088 C. grandiflora v1.1
Defline:  (1 of 2) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN Genomic Order:  88
Name:  ? Cagra.0716s0088 Secondary Identifier:  ? PAC:28895626
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0716s0088 0.5kb upstream 0.5kb upstream 1685 true Scaffold716: 356576-358260 Capsella grandiflora
Cagra.0716s0088 0.5kb upstream 0.5kb upstream 500 false Scaffold716: 357761-358260 Capsella grandiflora
Cagra.0716s0088 0.5kb downstream 0.5kb downstream 1685 true Scaffold716: 356076-357760 Capsella grandiflora
Cagra.0716s0088 0.5kb downstream 0.5kb downstream 500 false Scaffold716: 356076-356575 Capsella grandiflora
Cagra.0716s0088 1.0kb upstream 1.0kb upstream 2185 true Scaffold716: 356576-358760 Capsella grandiflora
Cagra.0716s0088 1.0kb upstream 1.0kb upstream 1000 false Scaffold716: 357761-358760 Capsella grandiflora
Cagra.0716s0088 1.0kb downstream 1.0kb downstream 2185 true Scaffold716: 355576-357760 Capsella grandiflora
Cagra.0716s0088 1.0kb downstream 1.0kb downstream 1000 false Scaffold716: 355576-356575 Capsella grandiflora
Cagra.0716s0088 2.0kb upstream 2.0kb upstream 3185 true Scaffold716: 356576-359760 Capsella grandiflora
Cagra.0716s0088 2.0kb upstream 2.0kb upstream 2000 false Scaffold716: 357761-359760 Capsella grandiflora
Cagra.0716s0088 2.0kb downstream 2.0kb downstream 3185 true Scaffold716: 354576-357760 Capsella grandiflora
Cagra.0716s0088 2.0kb downstream 2.0kb downstream 2000 false Scaffold716: 354576-356575 Capsella grandiflora
Cagra.0716s0088 5.0kb upstream 5.0kb upstream 6185 true Scaffold716: 356576-362760 Capsella grandiflora
Cagra.0716s0088 5.0kb upstream 5.0kb upstream 5000 false Scaffold716: 357761-362760 Capsella grandiflora
Cagra.0716s0088 5.0kb downstream 5.0kb downstream 6185 true Scaffold716: 351576-357760 Capsella grandiflora
Cagra.0716s0088 5.0kb downstream 5.0kb downstream 5000 false Scaffold716: 351576-356575 Capsella grandiflora
Cagra.0716s0088 10.0kb upstream 10.0kb upstream 11185 true Scaffold716: 356576-367760 Capsella grandiflora
Cagra.0716s0088 10.0kb upstream 10.0kb upstream 10000 false Scaffold716: 357761-367760 Capsella grandiflora
Cagra.0716s0088 10.0kb downstream 10.0kb downstream 11185 true Scaffold716: 346576-357760 Capsella grandiflora
Cagra.0716s0088 10.0kb downstream 10.0kb downstream 10000 false Scaffold716: 346576-356575 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363386 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain