Gene : Cagra.5105s0004 C. grandiflora v1.1
Defline:  (1 of 168) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4
Name:  ? Cagra.5105s0004 Secondary Identifier:  ? PAC:28905330
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5105s0004 0.5kb upstream 0.5kb upstream 1937 true Scaffold5105: 15918-17854 Capsella grandiflora
Cagra.5105s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold5105: 15918-16417 Capsella grandiflora
Cagra.5105s0004 0.5kb downstream 0.5kb downstream 1937 true Scaffold5105: 16418-18354 Capsella grandiflora
Cagra.5105s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold5105: 17855-18354 Capsella grandiflora
Cagra.5105s0004 1.0kb upstream 1.0kb upstream 2437 true Scaffold5105: 15418-17854 Capsella grandiflora
Cagra.5105s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold5105: 15418-16417 Capsella grandiflora
Cagra.5105s0004 1.0kb downstream 1.0kb downstream 2437 true Scaffold5105: 16418-18854 Capsella grandiflora
Cagra.5105s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold5105: 17855-18854 Capsella grandiflora
Cagra.5105s0004 2.0kb upstream 2.0kb upstream 3437 true Scaffold5105: 14418-17854 Capsella grandiflora
Cagra.5105s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold5105: 14418-16417 Capsella grandiflora
Cagra.5105s0004 2.0kb downstream 2.0kb downstream 3437 true Scaffold5105: 16418-19854 Capsella grandiflora
Cagra.5105s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold5105: 17855-19854 Capsella grandiflora
Cagra.5105s0004 5.0kb upstream 5.0kb upstream 6437 true Scaffold5105: 11418-17854 Capsella grandiflora
Cagra.5105s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold5105: 11418-16417 Capsella grandiflora
Cagra.5105s0004 5.0kb downstream 5.0kb downstream 5020 true Scaffold5105: 16418-21437 Capsella grandiflora
Cagra.5105s0004 5.0kb downstream 5.0kb downstream 3583 false Scaffold5105: 17855-21437 Capsella grandiflora
Cagra.5105s0004 10.0kb upstream 10.0kb upstream 11437 true Scaffold5105: 6418-17854 Capsella grandiflora
Cagra.5105s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold5105: 6418-16417 Capsella grandiflora
Cagra.5105s0004 10.0kb downstream 10.0kb downstream 5020 true Scaffold5105: 16418-21437 Capsella grandiflora
Cagra.5105s0004 10.0kb downstream 10.0kb downstream 3583 false Scaffold5105: 17855-21437 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362931 5261 Brassicaceae View MSA
123829830 5264 Brassicales-Malvales View MSA
124344349 5266 SBM View MSA
124244196 5268 Malvidae View MSA
124070101 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain