Gene : Cagra.0863s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  1
Name:  ? Cagra.0863s0001 Secondary Identifier:  ? PAC:28899786
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CAROTENOID-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5943 Capsella grandiflora pathologic  
Cgrandiflora PWY-5947 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0863s0001 0.5kb upstream 0.5kb upstream 764 true Scaffold863: 1-764 Capsella grandiflora
Cagra.0863s0001 0.5kb upstream 0.5kb upstream 23 false Scaffold863: 1-23 Capsella grandiflora
Cagra.0863s0001 0.5kb downstream 0.5kb downstream 1241 true Scaffold863: 24-1264 Capsella grandiflora
Cagra.0863s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold863: 765-1264 Capsella grandiflora
Cagra.0863s0001 1.0kb upstream 1.0kb upstream 764 true Scaffold863: 1-764 Capsella grandiflora
Cagra.0863s0001 1.0kb upstream 1.0kb upstream 23 false Scaffold863: 1-23 Capsella grandiflora
Cagra.0863s0001 1.0kb downstream 1.0kb downstream 1741 true Scaffold863: 24-1764 Capsella grandiflora
Cagra.0863s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold863: 765-1764 Capsella grandiflora
Cagra.0863s0001 2.0kb upstream 2.0kb upstream 764 true Scaffold863: 1-764 Capsella grandiflora
Cagra.0863s0001 2.0kb upstream 2.0kb upstream 23 false Scaffold863: 1-23 Capsella grandiflora
Cagra.0863s0001 2.0kb downstream 2.0kb downstream 1932 true Scaffold863: 24-1955 Capsella grandiflora
Cagra.0863s0001 2.0kb downstream 2.0kb downstream 1191 false Scaffold863: 765-1955 Capsella grandiflora
Cagra.0863s0001 5.0kb upstream 5.0kb upstream 764 true Scaffold863: 1-764 Capsella grandiflora
Cagra.0863s0001 5.0kb upstream 5.0kb upstream 23 false Scaffold863: 1-23 Capsella grandiflora
Cagra.0863s0001 5.0kb downstream 5.0kb downstream 1932 true Scaffold863: 24-1955 Capsella grandiflora
Cagra.0863s0001 5.0kb downstream 5.0kb downstream 1191 false Scaffold863: 765-1955 Capsella grandiflora
Cagra.0863s0001 10.0kb upstream 10.0kb upstream 764 true Scaffold863: 1-764 Capsella grandiflora
Cagra.0863s0001 10.0kb upstream 10.0kb upstream 23 false Scaffold863: 1-23 Capsella grandiflora
Cagra.0863s0001 10.0kb downstream 10.0kb downstream 1932 true Scaffold863: 24-1955 Capsella grandiflora
Cagra.0863s0001 10.0kb downstream 10.0kb downstream 1191 false Scaffold863: 765-1955 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334435 5261 Brassicaceae Singleton cluster - no MSA
123775270 5264 Brassicales-Malvales Singleton cluster - no MSA
124273680 5266 SBM Singleton cluster - no MSA
124129252 5268 Malvidae Singleton cluster - no MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain