Gene : Cagra.5996s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31636:SF53 - SCARECROW-LIKE PROTEIN 15 Genomic Order:  1
Name:  ? Cagra.5996s0001 Secondary Identifier:  ? PAC:28905496
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5996s0001 0.5kb upstream 0.5kb upstream 2128 true Scaffold5996: 32-2159 Capsella grandiflora
Cagra.5996s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold5996: 32-531 Capsella grandiflora
Cagra.5996s0001 0.5kb downstream 0.5kb downstream 2128 true Scaffold5996: 532-2659 Capsella grandiflora
Cagra.5996s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold5996: 2160-2659 Capsella grandiflora
Cagra.5996s0001 1.0kb upstream 1.0kb upstream 2159 true Scaffold5996: 1-2159 Capsella grandiflora
Cagra.5996s0001 1.0kb upstream 1.0kb upstream 531 false Scaffold5996: 1-531 Capsella grandiflora
Cagra.5996s0001 1.0kb downstream 1.0kb downstream 2628 true Scaffold5996: 532-3159 Capsella grandiflora
Cagra.5996s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold5996: 2160-3159 Capsella grandiflora
Cagra.5996s0001 2.0kb upstream 2.0kb upstream 2159 true Scaffold5996: 1-2159 Capsella grandiflora
Cagra.5996s0001 2.0kb upstream 2.0kb upstream 531 false Scaffold5996: 1-531 Capsella grandiflora
Cagra.5996s0001 2.0kb downstream 2.0kb downstream 3628 true Scaffold5996: 532-4159 Capsella grandiflora
Cagra.5996s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold5996: 2160-4159 Capsella grandiflora
Cagra.5996s0001 5.0kb upstream 5.0kb upstream 2159 true Scaffold5996: 1-2159 Capsella grandiflora
Cagra.5996s0001 5.0kb upstream 5.0kb upstream 531 false Scaffold5996: 1-531 Capsella grandiflora
Cagra.5996s0001 5.0kb downstream 5.0kb downstream 6628 true Scaffold5996: 532-7159 Capsella grandiflora
Cagra.5996s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold5996: 2160-7159 Capsella grandiflora
Cagra.5996s0001 10.0kb upstream 10.0kb upstream 2159 true Scaffold5996: 1-2159 Capsella grandiflora
Cagra.5996s0001 10.0kb upstream 10.0kb upstream 531 false Scaffold5996: 1-531 Capsella grandiflora
Cagra.5996s0001 10.0kb downstream 10.0kb downstream 11628 true Scaffold5996: 532-12159 Capsella grandiflora
Cagra.5996s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold5996: 2160-12159 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381032 5261 Brassicaceae View MSA
123834576 5264 Brassicales-Malvales View MSA
124346234 5266 SBM View MSA
124241180 5268 Malvidae View MSA
124061987 5270 Rosid View MSA
123738804 5271 Pentapetalae View MSA
122792539 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain