Gene : Cagra.9490s0017 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30345 - RIBOSE-5-PHOSPHATE ISOMERASE B Genomic Order:  17
Name:  ? Cagra.9490s0017 Secondary Identifier:  ? PAC:28914416
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CALVIN-PWY Capsella grandiflora pathologic  
Cgrandiflora NONOXIPENT-PWY Capsella grandiflora pathologic  
Cgrandiflora PENTOSE-P-PWY Capsella grandiflora pathologic  
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5723 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.9490s0017 0.5kb upstream 0.5kb upstream 1705 true Scaffold9490: 63026-64730 Capsella grandiflora
Cagra.9490s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold9490: 64231-64730 Capsella grandiflora
Cagra.9490s0017 0.5kb downstream 0.5kb downstream 1705 true Scaffold9490: 62526-64230 Capsella grandiflora
Cagra.9490s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold9490: 62526-63025 Capsella grandiflora
Cagra.9490s0017 1.0kb upstream 1.0kb upstream 2205 true Scaffold9490: 63026-65230 Capsella grandiflora
Cagra.9490s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold9490: 64231-65230 Capsella grandiflora
Cagra.9490s0017 1.0kb downstream 1.0kb downstream 2205 true Scaffold9490: 62026-64230 Capsella grandiflora
Cagra.9490s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold9490: 62026-63025 Capsella grandiflora
Cagra.9490s0017 2.0kb upstream 2.0kb upstream 3205 true Scaffold9490: 63026-66230 Capsella grandiflora
Cagra.9490s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold9490: 64231-66230 Capsella grandiflora
Cagra.9490s0017 2.0kb downstream 2.0kb downstream 3205 true Scaffold9490: 61026-64230 Capsella grandiflora
Cagra.9490s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold9490: 61026-63025 Capsella grandiflora
Cagra.9490s0017 5.0kb upstream 5.0kb upstream 6205 true Scaffold9490: 63026-69230 Capsella grandiflora
Cagra.9490s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold9490: 64231-69230 Capsella grandiflora
Cagra.9490s0017 5.0kb downstream 5.0kb downstream 6205 true Scaffold9490: 58026-64230 Capsella grandiflora
Cagra.9490s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold9490: 58026-63025 Capsella grandiflora
Cagra.9490s0017 10.0kb upstream 10.0kb upstream 11205 true Scaffold9490: 63026-74230 Capsella grandiflora
Cagra.9490s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold9490: 64231-74230 Capsella grandiflora
Cagra.9490s0017 10.0kb downstream 10.0kb downstream 11205 true Scaffold9490: 53026-64230 Capsella grandiflora
Cagra.9490s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold9490: 53026-63025 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378066 5261 Brassicaceae View MSA
123831184 5264 Brassicales-Malvales View MSA
124349311 5266 SBM View MSA
124244749 5268 Malvidae View MSA
124062390 5270 Rosid View MSA
123736544 5271 Pentapetalae View MSA
122789174 5272 Eudicot View MSA
122042906 5273 Angiosperm View MSA
121349668 5274 Embryophyte View MSA
123381392 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain