Gene : Ca_17187 C. arietinum v1.0
Defline:  (1 of 1) PTHR22594//PTHR22594:SF20 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE Genomic Order:  14
Name:  ? Ca_17187 Secondary Identifier:  ? PAC:40144057
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Carietinum TRNA-CHARGING-PWY Cicer arietinum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ca_17187 0.5kb upstream 0.5kb upstream 9089 true scaffold1047: 176116-185204 Cicer arietinum
Ca_17187 0.5kb upstream 0.5kb upstream 500 false scaffold1047: 176116-176615 Cicer arietinum
Ca_17187 0.5kb downstream 0.5kb downstream 9089 true scaffold1047: 176616-185704 Cicer arietinum
Ca_17187 0.5kb downstream 0.5kb downstream 500 false scaffold1047: 185205-185704 Cicer arietinum
Ca_17187 1.0kb upstream 1.0kb upstream 9589 true scaffold1047: 175616-185204 Cicer arietinum
Ca_17187 1.0kb upstream 1.0kb upstream 1000 false scaffold1047: 175616-176615 Cicer arietinum
Ca_17187 1.0kb downstream 1.0kb downstream 9589 true scaffold1047: 176616-186204 Cicer arietinum
Ca_17187 1.0kb downstream 1.0kb downstream 1000 false scaffold1047: 185205-186204 Cicer arietinum
Ca_17187 2.0kb upstream 2.0kb upstream 10589 true scaffold1047: 174616-185204 Cicer arietinum
Ca_17187 2.0kb upstream 2.0kb upstream 2000 false scaffold1047: 174616-176615 Cicer arietinum
Ca_17187 2.0kb downstream 2.0kb downstream 10589 true scaffold1047: 176616-187204 Cicer arietinum
Ca_17187 2.0kb downstream 2.0kb downstream 2000 false scaffold1047: 185205-187204 Cicer arietinum
Ca_17187 5.0kb upstream 5.0kb upstream 13589 true scaffold1047: 171616-185204 Cicer arietinum
Ca_17187 5.0kb upstream 5.0kb upstream 5000 false scaffold1047: 171616-176615 Cicer arietinum
Ca_17187 5.0kb downstream 5.0kb downstream 13589 true scaffold1047: 176616-190204 Cicer arietinum
Ca_17187 5.0kb downstream 5.0kb downstream 5000 false scaffold1047: 185205-190204 Cicer arietinum
Ca_17187 10.0kb upstream 10.0kb upstream 18589 true scaffold1047: 166616-185204 Cicer arietinum
Ca_17187 10.0kb upstream 10.0kb upstream 10000 false scaffold1047: 166616-176615 Cicer arietinum
Ca_17187 10.0kb downstream 10.0kb downstream 18589 true scaffold1047: 176616-195204 Cicer arietinum
Ca_17187 10.0kb downstream 10.0kb downstream 10000 false scaffold1047: 185205-195204 Cicer arietinum

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305134 5265 Fabidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain