Gene : Ca_08785 C. arietinum v1.0
Defline:  (1 of 8) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  96
Name:  ? Ca_08785 Secondary Identifier:  ? PAC:40148511
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ca_08785 0.5kb upstream 0.5kb upstream 3080 true scaffold1348_1: 946708-949787 Cicer arietinum
Ca_08785 0.5kb upstream 0.5kb upstream 500 false scaffold1348_1: 946708-947207 Cicer arietinum
Ca_08785 0.5kb downstream 0.5kb downstream 3080 true scaffold1348_1: 947208-950287 Cicer arietinum
Ca_08785 0.5kb downstream 0.5kb downstream 500 false scaffold1348_1: 949788-950287 Cicer arietinum
Ca_08785 1.0kb upstream 1.0kb upstream 3580 true scaffold1348_1: 946208-949787 Cicer arietinum
Ca_08785 1.0kb upstream 1.0kb upstream 1000 false scaffold1348_1: 946208-947207 Cicer arietinum
Ca_08785 1.0kb downstream 1.0kb downstream 3580 true scaffold1348_1: 947208-950787 Cicer arietinum
Ca_08785 1.0kb downstream 1.0kb downstream 1000 false scaffold1348_1: 949788-950787 Cicer arietinum
Ca_08785 2.0kb upstream 2.0kb upstream 4580 true scaffold1348_1: 945208-949787 Cicer arietinum
Ca_08785 2.0kb upstream 2.0kb upstream 2000 false scaffold1348_1: 945208-947207 Cicer arietinum
Ca_08785 2.0kb downstream 2.0kb downstream 4580 true scaffold1348_1: 947208-951787 Cicer arietinum
Ca_08785 2.0kb downstream 2.0kb downstream 2000 false scaffold1348_1: 949788-951787 Cicer arietinum
Ca_08785 5.0kb upstream 5.0kb upstream 7580 true scaffold1348_1: 942208-949787 Cicer arietinum
Ca_08785 5.0kb upstream 5.0kb upstream 5000 false scaffold1348_1: 942208-947207 Cicer arietinum
Ca_08785 5.0kb downstream 5.0kb downstream 7580 true scaffold1348_1: 947208-954787 Cicer arietinum
Ca_08785 5.0kb downstream 5.0kb downstream 5000 false scaffold1348_1: 949788-954787 Cicer arietinum
Ca_08785 10.0kb upstream 10.0kb upstream 12580 true scaffold1348_1: 937208-949787 Cicer arietinum
Ca_08785 10.0kb upstream 10.0kb upstream 10000 false scaffold1348_1: 937208-947207 Cicer arietinum
Ca_08785 10.0kb downstream 10.0kb downstream 12580 true scaffold1348_1: 947208-959787 Cicer arietinum
Ca_08785 10.0kb downstream 10.0kb downstream 10000 false scaffold1348_1: 949788-959787 Cicer arietinum

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310699 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain