Gene : Glyma.05G020400 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR31413:SF4 - NINJA-FAMILY PROTEIN AFP1-RELATED Genomic Order:  204
Name:  ? Glyma.05G020400 Secondary Identifier:  ? PAC:30523895
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G020400 0.5kb upstream 0.5kb upstream 4171 true Chr05: 1821164-1825334 Glycine max
Glyma.05G020400 0.5kb upstream 0.5kb upstream 500 false Chr05: 1821164-1821663 Glycine max
Glyma.05G020400 0.5kb downstream 0.5kb downstream 4171 true Chr05: 1821664-1825834 Glycine max
Glyma.05G020400 0.5kb downstream 0.5kb downstream 500 false Chr05: 1825335-1825834 Glycine max
Glyma.05G020400 1.0kb upstream 1.0kb upstream 4671 true Chr05: 1820664-1825334 Glycine max
Glyma.05G020400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1820664-1821663 Glycine max
Glyma.05G020400 1.0kb downstream 1.0kb downstream 4671 true Chr05: 1821664-1826334 Glycine max
Glyma.05G020400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1825335-1826334 Glycine max
Glyma.05G020400 2.0kb upstream 2.0kb upstream 5671 true Chr05: 1819664-1825334 Glycine max
Glyma.05G020400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1819664-1821663 Glycine max
Glyma.05G020400 2.0kb downstream 2.0kb downstream 5671 true Chr05: 1821664-1827334 Glycine max
Glyma.05G020400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1825335-1827334 Glycine max
Glyma.05G020400 5.0kb upstream 5.0kb upstream 8671 true Chr05: 1816664-1825334 Glycine max
Glyma.05G020400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1816664-1821663 Glycine max
Glyma.05G020400 5.0kb downstream 5.0kb downstream 8671 true Chr05: 1821664-1830334 Glycine max
Glyma.05G020400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1825335-1830334 Glycine max
Glyma.05G020400 10.0kb upstream 10.0kb upstream 13671 true Chr05: 1811664-1825334 Glycine max
Glyma.05G020400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1811664-1821663 Glycine max
Glyma.05G020400 10.0kb downstream 10.0kb downstream 13671 true Chr05: 1821664-1835334 Glycine max
Glyma.05G020400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1825335-1835334 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315194 5265 Fabidae View MSA
124071046 5270 Rosid View MSA
123753389 5271 Pentapetalae View MSA
122792096 5272 Eudicot View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.278012 0.0 1.07847   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0211309 0.0 0.0948195 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.138287 0.0 0.550437 Low  
cufflinks 0.0575684 0.0 0.238404 Low  
cufflinks 0.0197359 0.0 0.0892652 Low  
cufflinks 4.499       High
cufflinks 0.057        
cufflinks 0.403        
cufflinks 0.025     Low  
cufflinks 0.003     Low Low
cufflinks 0.027     Low  
cufflinks 0.084     Low  
cufflinks 2.591       High
cufflinks 0.16        
cufflinks 0.067     Low  
cufflinks 0.046     Low  
cufflinks 0.076        
cufflinks 0.029     Low  
cufflinks 2.659       High
cufflinks 0.021     Low  
cufflinks 0.055     Low  
cufflinks 0.212        

0 Strain