Gene : Glyma.05G017800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Genomic Order:  178
Name:  ? Glyma.05G017800 Secondary Identifier:  ? PAC:30525083
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G017800 0.5kb upstream 0.5kb upstream 9660 true Chr05: 1561319-1570978 Glycine max
Glyma.05G017800 0.5kb upstream 0.5kb upstream 500 false Chr05: 1561319-1561818 Glycine max
Glyma.05G017800 0.5kb downstream 0.5kb downstream 9660 true Chr05: 1561819-1571478 Glycine max
Glyma.05G017800 0.5kb downstream 0.5kb downstream 500 false Chr05: 1570979-1571478 Glycine max
Glyma.05G017800 1.0kb upstream 1.0kb upstream 10160 true Chr05: 1560819-1570978 Glycine max
Glyma.05G017800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1560819-1561818 Glycine max
Glyma.05G017800 1.0kb downstream 1.0kb downstream 10160 true Chr05: 1561819-1571978 Glycine max
Glyma.05G017800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1570979-1571978 Glycine max
Glyma.05G017800 2.0kb upstream 2.0kb upstream 11160 true Chr05: 1559819-1570978 Glycine max
Glyma.05G017800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1559819-1561818 Glycine max
Glyma.05G017800 2.0kb downstream 2.0kb downstream 11160 true Chr05: 1561819-1572978 Glycine max
Glyma.05G017800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1570979-1572978 Glycine max
Glyma.05G017800 5.0kb upstream 5.0kb upstream 14160 true Chr05: 1556819-1570978 Glycine max
Glyma.05G017800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1556819-1561818 Glycine max
Glyma.05G017800 5.0kb downstream 5.0kb downstream 14160 true Chr05: 1561819-1575978 Glycine max
Glyma.05G017800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1570979-1575978 Glycine max
Glyma.05G017800 10.0kb upstream 10.0kb upstream 19160 true Chr05: 1551819-1570978 Glycine max
Glyma.05G017800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1551819-1561818 Glycine max
Glyma.05G017800 10.0kb downstream 10.0kb downstream 19160 true Chr05: 1561819-1580978 Glycine max
Glyma.05G017800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1570979-1580978 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302462 5265 Fabidae View MSA
124066777 5270 Rosid View MSA
123738645 5271 Pentapetalae View MSA
122790983 5272 Eudicot View MSA
122046881 5273 Angiosperm View MSA
121348142 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.35434 0.0 19.4048    
cufflinks 5.88651 0.0 18.1427    
cufflinks 3.02148 0.0 10.5997   Low
cufflinks 5.45116 0.0 17.4437    
cufflinks 14.9092 0.0 44.8695   High
cufflinks 10.6329 0.0 32.8901    
cufflinks 6.64623 0.0 20.2196    
cufflinks 7.43546 0.0 22.9326    
cufflinks 7.06131 0.0 22.4469    
cufflinks 0.952        
cufflinks 0.583        
cufflinks 1.356        
cufflinks 2.705       High
cufflinks 2.533       High
cufflinks 1.093        
cufflinks 0.635        
cufflinks 0.91        
cufflinks 3.702       High
cufflinks 0.808        
cufflinks 0.424       Low
cufflinks 0.56        
cufflinks 0.563        
cufflinks 0.562        
cufflinks 0.675        
cufflinks 0.557        
cufflinks 1.241        

0 Strain