Gene : Glyma.05G019600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33370:SF1 - TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC Genomic Order:  196
Name:  ? Glyma.05G019600 Secondary Identifier:  ? PAC:30524048
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G019600 0.5kb upstream 0.5kb upstream 1442 true Chr05: 1744399-1745840 Glycine max
Glyma.05G019600 0.5kb upstream 0.5kb upstream 500 false Chr05: 1744399-1744898 Glycine max
Glyma.05G019600 0.5kb downstream 0.5kb downstream 1442 true Chr05: 1744899-1746340 Glycine max
Glyma.05G019600 0.5kb downstream 0.5kb downstream 500 false Chr05: 1745841-1746340 Glycine max
Glyma.05G019600 1.0kb upstream 1.0kb upstream 1942 true Chr05: 1743899-1745840 Glycine max
Glyma.05G019600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1743899-1744898 Glycine max
Glyma.05G019600 1.0kb downstream 1.0kb downstream 1942 true Chr05: 1744899-1746840 Glycine max
Glyma.05G019600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1745841-1746840 Glycine max
Glyma.05G019600 2.0kb upstream 2.0kb upstream 2942 true Chr05: 1742899-1745840 Glycine max
Glyma.05G019600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1742899-1744898 Glycine max
Glyma.05G019600 2.0kb downstream 2.0kb downstream 2942 true Chr05: 1744899-1747840 Glycine max
Glyma.05G019600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1745841-1747840 Glycine max
Glyma.05G019600 5.0kb upstream 5.0kb upstream 5942 true Chr05: 1739899-1745840 Glycine max
Glyma.05G019600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1739899-1744898 Glycine max
Glyma.05G019600 5.0kb downstream 5.0kb downstream 5942 true Chr05: 1744899-1750840 Glycine max
Glyma.05G019600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1745841-1750840 Glycine max
Glyma.05G019600 10.0kb upstream 10.0kb upstream 10942 true Chr05: 1734899-1745840 Glycine max
Glyma.05G019600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1734899-1744898 Glycine max
Glyma.05G019600 10.0kb downstream 10.0kb downstream 10942 true Chr05: 1744899-1755840 Glycine max
Glyma.05G019600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1745841-1755840 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028984 5273 Angiosperm View MSA
122301110 5265 Fabidae View MSA
124050669 5270 Rosid View MSA
123744849 5271 Pentapetalae View MSA
122771270 5272 Eudicot View MSA
121351623 5274 Embryophyte View MSA
123428074 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9239 0.0 55.0226   High
cufflinks 7.0589 0.0 22.1405    
cufflinks 4.79301 0.0 16.0066    
cufflinks 3.94625 0.0 13.4008    
cufflinks 4.52267 0.0 14.9542    
cufflinks 2.57193 0.0 9.07401   Low
cufflinks 3.41186 0.0 11.7035    
cufflinks 5.55091 0.0 17.9974    
cufflinks 3.60169 0.0 12.2958    
cufflinks 1.0        
cufflinks 0.353       Low
cufflinks 1.293        
cufflinks 1.042        
cufflinks 1.377        
cufflinks 0.399       Low
cufflinks 7.458     High High
cufflinks 0.387       Low
cufflinks 0.985        
cufflinks 2.379        
cufflinks 7.373     High High
cufflinks 0.271       Low
cufflinks 5.825       High
cufflinks 6.696       High
cufflinks 0.388       Low
cufflinks 6.679       High
cufflinks 0.488        

0 Strain