Gene : Glyma.05G012700 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR23245:SF36 - TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE Genomic Order:  127
Name:  ? Glyma.05G012700 Secondary Identifier:  ? PAC:30527158
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6829 Glycine max pathologic  
Gmax PWY-7283 Glycine max pathologic  
Gmax PWY-7286 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G012700 0.5kb upstream 0.5kb upstream 5127 true Chr05: 1188556-1193682 Glycine max
Glyma.05G012700 0.5kb upstream 0.5kb upstream 500 false Chr05: 1193183-1193682 Glycine max
Glyma.05G012700 0.5kb downstream 0.5kb downstream 5127 true Chr05: 1188056-1193182 Glycine max
Glyma.05G012700 0.5kb downstream 0.5kb downstream 500 false Chr05: 1188056-1188555 Glycine max
Glyma.05G012700 1.0kb upstream 1.0kb upstream 5627 true Chr05: 1188556-1194182 Glycine max
Glyma.05G012700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1193183-1194182 Glycine max
Glyma.05G012700 1.0kb downstream 1.0kb downstream 5627 true Chr05: 1187556-1193182 Glycine max
Glyma.05G012700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1187556-1188555 Glycine max
Glyma.05G012700 2.0kb upstream 2.0kb upstream 6627 true Chr05: 1188556-1195182 Glycine max
Glyma.05G012700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1193183-1195182 Glycine max
Glyma.05G012700 2.0kb downstream 2.0kb downstream 6627 true Chr05: 1186556-1193182 Glycine max
Glyma.05G012700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1186556-1188555 Glycine max
Glyma.05G012700 5.0kb upstream 5.0kb upstream 9627 true Chr05: 1188556-1198182 Glycine max
Glyma.05G012700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1193183-1198182 Glycine max
Glyma.05G012700 5.0kb downstream 5.0kb downstream 9627 true Chr05: 1183556-1193182 Glycine max
Glyma.05G012700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1183556-1188555 Glycine max
Glyma.05G012700 10.0kb upstream 10.0kb upstream 14627 true Chr05: 1188556-1203182 Glycine max
Glyma.05G012700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1193183-1203182 Glycine max
Glyma.05G012700 10.0kb downstream 10.0kb downstream 14627 true Chr05: 1178556-1193182 Glycine max
Glyma.05G012700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1178556-1188555 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313246 5265 Fabidae View MSA
124073928 5270 Rosid View MSA
123747956 5271 Pentapetalae View MSA
122788813 5272 Eudicot View MSA
122045692 5273 Angiosperm View MSA
121347346 5274 Embryophyte View MSA
123426085 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.7299 0.0 5.81516    
cufflinks 3.50754 0.0 10.6754   High
cufflinks 1.95569 0.0 6.42996    
cufflinks 2.16157 0.0 7.03808    
cufflinks 2.60104 0.0 8.2967    
cufflinks 1.36401 0.0 4.70533   Low
cufflinks 3.2625 0.0 10.078   High
cufflinks 2.31903 0.0 7.48077    
cufflinks 2.52494 0.0 8.06284    
cufflinks 1.214        
cufflinks 1.184        
cufflinks 2.015        
cufflinks 2.116        
cufflinks 2.297       High
cufflinks 1.445        
cufflinks 1.603        
cufflinks 0.848       Low
cufflinks 2.118        
cufflinks 3.195       High
cufflinks 1.466        
cufflinks 1.125       Low
cufflinks 1.621        
cufflinks 2.185        
cufflinks 1.142        
cufflinks 1.502        
cufflinks 1.259        

0 Strain