Gene : Glyma.05G016400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Genomic Order:  164
Name:  ? Glyma.05G016400 Secondary Identifier:  ? PAC:30524881
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G016400 0.5kb upstream 0.5kb upstream 9490 true Chr05: 1464355-1473844 Glycine max
Glyma.05G016400 0.5kb upstream 0.5kb upstream 500 false Chr05: 1473345-1473844 Glycine max
Glyma.05G016400 0.5kb downstream 0.5kb downstream 9490 true Chr05: 1463855-1473344 Glycine max
Glyma.05G016400 0.5kb downstream 0.5kb downstream 500 false Chr05: 1463855-1464354 Glycine max
Glyma.05G016400 1.0kb upstream 1.0kb upstream 9990 true Chr05: 1464355-1474344 Glycine max
Glyma.05G016400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1473345-1474344 Glycine max
Glyma.05G016400 1.0kb downstream 1.0kb downstream 9990 true Chr05: 1463355-1473344 Glycine max
Glyma.05G016400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1463355-1464354 Glycine max
Glyma.05G016400 2.0kb upstream 2.0kb upstream 10990 true Chr05: 1464355-1475344 Glycine max
Glyma.05G016400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1473345-1475344 Glycine max
Glyma.05G016400 2.0kb downstream 2.0kb downstream 10990 true Chr05: 1462355-1473344 Glycine max
Glyma.05G016400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1462355-1464354 Glycine max
Glyma.05G016400 5.0kb upstream 5.0kb upstream 13990 true Chr05: 1464355-1478344 Glycine max
Glyma.05G016400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1473345-1478344 Glycine max
Glyma.05G016400 5.0kb downstream 5.0kb downstream 13990 true Chr05: 1459355-1473344 Glycine max
Glyma.05G016400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1459355-1464354 Glycine max
Glyma.05G016400 10.0kb upstream 10.0kb upstream 18990 true Chr05: 1464355-1483344 Glycine max
Glyma.05G016400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1473345-1483344 Glycine max
Glyma.05G016400 10.0kb downstream 10.0kb downstream 18990 true Chr05: 1454355-1473344 Glycine max
Glyma.05G016400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1454355-1464354 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302005 5265 Fabidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.5369 0.0 113.149 High  
cufflinks 28.647 0.0 105.363 High  
cufflinks 20.748 0.0 72.8331 High Low
cufflinks 28.0802 0.0 102.547 High  
cufflinks 40.0629 0.0 157.361 High High
cufflinks 20.5313 0.0 71.7996   Low
cufflinks 44.1667 0.0 177.956 High High
cufflinks 24.4 0.0 87.2793 High  
cufflinks 31.9409 0.0 119.703 High  
cufflinks 2.611        
cufflinks 1.166       Low
cufflinks 3.388        
cufflinks 5.326       High
cufflinks 7.511     High High
cufflinks 1.992        
cufflinks 3.507        
cufflinks 1.733       Low
cufflinks 4.172        
cufflinks 3.86        
cufflinks 3.651        
cufflinks 1.784        
cufflinks 3.31        
cufflinks 3.045        
cufflinks 1.427       Low
cufflinks 3.834        
cufflinks 2.295        

0 Strain